Yeast dynamic metabolic flux measurement in nutrient-rich media by hplc and accelerator mass spectrometry

Benjamin J. Stewart, Ali Navid, Ken W Turteltaub, Graham Bench

Research output: Contribution to journalArticle

7 Citations (Scopus)

Abstract

Metabolic flux, the flow of metabolites through networks of enzymes, represents the dynamic productive output of cells. Improved understanding of intracellular metabolic fluxes will enable targeted manipulation of metabolic pathways of medical and industrial importance to a greater degree than is currently possible. Flux balance analysis (FBA) is a constraint-based approach to modeling metabolic fluxes, but its utility is limited by a lack of experimental measurements. Incorporation of experimentally measured fluxes as system constraints will significantly improve the overall accuracy of FBA. We applied a novel, two-tiered approach in the yeast Saccharomyces cerevisiae to measure nutrient consumption rates (extracellular fluxes) and a targeted intracellular flux using a 14C-labeled precursor with HPLC separation and flux quantitation by accelerator mass spectrometry (AMS). The use of AMS to trace the intracellular fate of 14C-glutamine allowed the calculation of intracellular metabolic flux through this pathway, with glutathione as the metabolic end point. Measured flux values provided global constraints for the yeast FBA model which reduced model uncertainty by more than 20%, proving the importance of additional constraints in improving the accuracy of model predictions and demonstrating the use of AMS to measure intracellular metabolic fluxes. Our results highlight the need to use intracellular fluxes to constrain the models. We show that inclusion of just one such measurement alone can reduce the average variability of model predicted fluxes by 10%.

Original languageEnglish (US)
Pages (from-to)9812-9817
Number of pages6
JournalAnalytical Chemistry
Volume82
Issue number23
DOIs
StatePublished - Dec 1 2010
Externally publishedYes

Fingerprint

Yeast
Nutrients
Particle accelerators
Mass spectrometry
Fluxes
Metabolites
Glutamine
Glutathione

ASJC Scopus subject areas

  • Analytical Chemistry

Cite this

Yeast dynamic metabolic flux measurement in nutrient-rich media by hplc and accelerator mass spectrometry. / Stewart, Benjamin J.; Navid, Ali; Turteltaub, Ken W; Bench, Graham.

In: Analytical Chemistry, Vol. 82, No. 23, 01.12.2010, p. 9812-9817.

Research output: Contribution to journalArticle

Stewart, Benjamin J. ; Navid, Ali ; Turteltaub, Ken W ; Bench, Graham. / Yeast dynamic metabolic flux measurement in nutrient-rich media by hplc and accelerator mass spectrometry. In: Analytical Chemistry. 2010 ; Vol. 82, No. 23. pp. 9812-9817.
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