Toward a small molecule, biomimetic carbonic anhydrase model

Theoretical and experimental investigations of a panel of zinc(II) aza-macrocyclic catalysts

Lucas Koziol, Carlos A. Valdez, Sarah E. Baker, Edmond Y Lau, William C. Floyd, Sergio E. Wong, Joe H. Satcher, Felice C Lightstone, Roger D. Aines

Research output: Contribution to journalArticle

52 Citations (Scopus)

Abstract

A panel of five zinc-chelated aza-macrocycle ligands and their ability to catalyze the hydration of carbon dioxide to bicarbonate, H 2O + CO 2 → H + + HCO 3 -, was investigated using quantum-mechanical methods and stopped-flow experiments. The key intermediates in the reaction coordinate were optimized using the M06-2X density functional with aug-cc-pVTZ basis set. Activation energies for the first step in the catalytic cycle, nucleophilic CO 2 addition, were calculated from gas-phase optimized transition-state geometries. The computationally derived trend in activation energies was found to not correspond with the experimentally observed rates. However, activation energies for the second, bicarbonate release step, which were estimated using calculated bond dissociation energies, provided good agreement with the observed trend in rate constants. Thus, the joint theoretical and experimental results provide evidence that bicarbonate release, not CO 2 addition, may be the rate-limiting step in CO 2 hydration by zinc complexes of aza-macrocyclic ligands. pH-independent rate constants were found to increase with decreasing Lewis acidity of the ligand-Zn complex, and the trend in rate constants was correlated with molecular properties of the ligands. It is suggested that tuning catalytic efficiency through the first coordination shell of Zn 2+ ligands is predominantly a balance between increasing charge-donating character of the ligand and maintaining the catalytically relevant pK a below the operating pH.

Original languageEnglish (US)
Pages (from-to)6803-6812
Number of pages10
JournalInorganic Chemistry
Volume51
Issue number12
DOIs
StatePublished - Jun 18 2012
Externally publishedYes

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carbonic anhydrase
Carbonic Anhydrases
biomimetics
Biomimetics
Zinc
zinc
Carbon Monoxide
Ligands
catalysts
ligands
Catalysts
Molecules
Bicarbonates
molecules
Rate constants
carbonates
Activation energy
activation energy
trends
Hydration

ASJC Scopus subject areas

  • Inorganic Chemistry
  • Physical and Theoretical Chemistry

Cite this

Toward a small molecule, biomimetic carbonic anhydrase model : Theoretical and experimental investigations of a panel of zinc(II) aza-macrocyclic catalysts. / Koziol, Lucas; Valdez, Carlos A.; Baker, Sarah E.; Lau, Edmond Y; Floyd, William C.; Wong, Sergio E.; Satcher, Joe H.; Lightstone, Felice C; Aines, Roger D.

In: Inorganic Chemistry, Vol. 51, No. 12, 18.06.2012, p. 6803-6812.

Research output: Contribution to journalArticle

Koziol, Lucas ; Valdez, Carlos A. ; Baker, Sarah E. ; Lau, Edmond Y ; Floyd, William C. ; Wong, Sergio E. ; Satcher, Joe H. ; Lightstone, Felice C ; Aines, Roger D. / Toward a small molecule, biomimetic carbonic anhydrase model : Theoretical and experimental investigations of a panel of zinc(II) aza-macrocyclic catalysts. In: Inorganic Chemistry. 2012 ; Vol. 51, No. 12. pp. 6803-6812.
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