The role of retinoic acid in hepatic lipid homeostasis defined by genomic binding and transcriptome profiling

Yuqi He, Lei Gong, Yaping Fang, Qi Zhan, Hui Xin Liu, Yanliu Lu, Grace L. Guo, Lois Lehman-McKeeman, Jianwen Fang, Yu-Jui Yvonne Wan

Research output: Contribution to journalArticle

19 Citations (Scopus)

Abstract

Background: The eyes and skin are obvious retinoid target organs. Vitamin A deficiency causes night blindness and retinoids are widely used to treat acne and psoriasis. However, more than 90% of total body retinol is stored in liver stellate cells. In addition, hepatocytes produce the largest amount of retinol binding protein and cellular retinoic acid binding protein to mobilize retinol from the hepatic storage pool and deliver retinol to its receptors, respectively. Furthermore, hepatocytes express the highest amount of retinoid x receptor alpha (RXRα) among all the cell types. Surprisingly, the function of endogenous retinoids in the liver has received very little attention.Results: Based on the data generated from chromatin immunoprecipitation followed by sequencing, the global DNA binding of transcription factors including retinoid x receptor α (RXRα) along with its partners i.e. retinoic acid receptor α (RARα), pregnane x receptor (PXR), liver x receptor (LXR), farnesoid x receptor (FXR), and peroxisome proliferator-activated receptor α (PPARα) has been established. Based on the binding, functional annotation illustrated the role of those receptors in regulating hepatic lipid homeostasis. To correlate the DNA binding data with gene expression data, the expression patterns of 576 genes that regulate lipid homeostasis were studied in wild type and liver RXRα-null mice treated with and without RA. The data showed that RA treatment and RXRα-deficiency had opposite effects in regulating lipid homeostasis. A subset of genes (114), which could clearly differentiate the effect of ligand treatment and receptor deficiency, were selected for further functional analysis. The expression data suggested that RA treatment could produce unsaturated fatty acids and induce triglyceride breakdown, bile acid secretion, lipolysis, and retinoids elimination. In contrast, RXRα deficiency might induce the synthesis of saturated fatty acids, triglyceride, cholesterol, bile acids, and retinoids. In addition, DNA binding data indicated extensive cross-talk among RARα, PXR, LXR, FXR, and PPARα in regulating those RA/RXRα-dependent gene expression levels. Moreover, RA reduced serum cholesterol, triglyceride, and bile acid levels in mice.Conclusions: We have characterized the role of hepatic RA for the first time. Hepatic RA mediated through RXRα and its partners regulates lipid homeostasis.

Original languageEnglish (US)
Article number575
JournalBMC Genomics
Volume14
Issue number1
DOIs
StatePublished - Aug 28 2013

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Retinoids
Gene Expression Profiling
Tretinoin
Homeostasis
Lipids
Liver
Retinoic Acid Receptors
Bile Acids and Salts
Vitamin A
Pregnanes
Peroxisome Proliferator-Activated Receptors
Triglycerides
Hepatocytes
Cellular Retinol-Binding Proteins
Cholesterol
Night Blindness
Gene Expression
Vitamin A Deficiency
Chromatin Immunoprecipitation
Lipolysis

Keywords

  • Chromatin immunoprecipitation
  • Farnesnoid x receptor
  • Liver x receptor
  • Microarray
  • Nuclear receptor
  • Peroxisomal proliferator-activated receptor α
  • Pregnane x receptor
  • Retinoic acid receptor
  • Retinoids x receptor
  • Sequencing

ASJC Scopus subject areas

  • Biotechnology
  • Genetics
  • Medicine(all)

Cite this

The role of retinoic acid in hepatic lipid homeostasis defined by genomic binding and transcriptome profiling. / He, Yuqi; Gong, Lei; Fang, Yaping; Zhan, Qi; Liu, Hui Xin; Lu, Yanliu; Guo, Grace L.; Lehman-McKeeman, Lois; Fang, Jianwen; Wan, Yu-Jui Yvonne.

In: BMC Genomics, Vol. 14, No. 1, 575, 28.08.2013.

Research output: Contribution to journalArticle

He, Y, Gong, L, Fang, Y, Zhan, Q, Liu, HX, Lu, Y, Guo, GL, Lehman-McKeeman, L, Fang, J & Wan, Y-JY 2013, 'The role of retinoic acid in hepatic lipid homeostasis defined by genomic binding and transcriptome profiling', BMC Genomics, vol. 14, no. 1, 575. https://doi.org/10.1186/1471-2164-14-575
He, Yuqi ; Gong, Lei ; Fang, Yaping ; Zhan, Qi ; Liu, Hui Xin ; Lu, Yanliu ; Guo, Grace L. ; Lehman-McKeeman, Lois ; Fang, Jianwen ; Wan, Yu-Jui Yvonne. / The role of retinoic acid in hepatic lipid homeostasis defined by genomic binding and transcriptome profiling. In: BMC Genomics. 2013 ; Vol. 14, No. 1.
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AU - Gong, Lei

AU - Fang, Yaping

AU - Zhan, Qi

AU - Liu, Hui Xin

AU - Lu, Yanliu

AU - Guo, Grace L.

AU - Lehman-McKeeman, Lois

AU - Fang, Jianwen

AU - Wan, Yu-Jui Yvonne

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N2 - Background: The eyes and skin are obvious retinoid target organs. Vitamin A deficiency causes night blindness and retinoids are widely used to treat acne and psoriasis. However, more than 90% of total body retinol is stored in liver stellate cells. In addition, hepatocytes produce the largest amount of retinol binding protein and cellular retinoic acid binding protein to mobilize retinol from the hepatic storage pool and deliver retinol to its receptors, respectively. Furthermore, hepatocytes express the highest amount of retinoid x receptor alpha (RXRα) among all the cell types. Surprisingly, the function of endogenous retinoids in the liver has received very little attention.Results: Based on the data generated from chromatin immunoprecipitation followed by sequencing, the global DNA binding of transcription factors including retinoid x receptor α (RXRα) along with its partners i.e. retinoic acid receptor α (RARα), pregnane x receptor (PXR), liver x receptor (LXR), farnesoid x receptor (FXR), and peroxisome proliferator-activated receptor α (PPARα) has been established. Based on the binding, functional annotation illustrated the role of those receptors in regulating hepatic lipid homeostasis. To correlate the DNA binding data with gene expression data, the expression patterns of 576 genes that regulate lipid homeostasis were studied in wild type and liver RXRα-null mice treated with and without RA. The data showed that RA treatment and RXRα-deficiency had opposite effects in regulating lipid homeostasis. A subset of genes (114), which could clearly differentiate the effect of ligand treatment and receptor deficiency, were selected for further functional analysis. The expression data suggested that RA treatment could produce unsaturated fatty acids and induce triglyceride breakdown, bile acid secretion, lipolysis, and retinoids elimination. In contrast, RXRα deficiency might induce the synthesis of saturated fatty acids, triglyceride, cholesterol, bile acids, and retinoids. In addition, DNA binding data indicated extensive cross-talk among RARα, PXR, LXR, FXR, and PPARα in regulating those RA/RXRα-dependent gene expression levels. Moreover, RA reduced serum cholesterol, triglyceride, and bile acid levels in mice.Conclusions: We have characterized the role of hepatic RA for the first time. Hepatic RA mediated through RXRα and its partners regulates lipid homeostasis.

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