The genome sequence of methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the methanosarcinaceae inhabiting freshwater and saline environments

Stefan Spring, Carmen Scheuner, Alla Lapidus, Susan Lucas, Tijana Glavina Del Rio, Hope Tice, Alex Copeland, Jan Fang Cheng, Feng Chen, Matt Nolan, Elizabeth Saunders, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Athanasios Lykidis, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land & 15 others Loren Hauser, Yun Juan Chang, Cynthia D. Jeffries, Lynne Goodwin, John C. Detter, Thomas Brettin, Manfred Rohde, Markus Göker, Tanja Woyke, Jim Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk

Research output: Contribution to journalArticle

26 Citations (Scopus)

Abstract

Methanohalophilus mahii is the type species of the genus Methanohalophilus, which currently comprises three distinct species with validly published names. Mhp. mahii represents moderately halophilic methanogenic archaea with a strictly methylotrophic metabolism. The type strain SLP(T) was isolated from hypersaline sediments collected from the southern arm of Great Salt Lake, Utah. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,012,424 bp genome is a single replicon with 2032 protein-coding and 63 RNA genes and part of the Genomic Encyclopedia of Bacteria and Archaea project. A comparison of the reconstructed energy metabolism in the halophilic species Mhp. mahii with other representatives of the Methanosarcinaceae reveals some interesting differences to freshwater species.

Original languageEnglish (US)
Article number690737
JournalArchaea
Volume2010
DOIs
StatePublished - 2010

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Methanosarcinaceae
Archaea
Fresh Water
energy metabolism
Energy Metabolism
genome
metabolism
Great Salt Lake
Genome
Encyclopedias
replicon
Replicon
Lakes
Names
energy
Salts
RNA
Bacteria
genomics
sediments

ASJC Scopus subject areas

  • Microbiology
  • Physiology
  • Ecology, Evolution, Behavior and Systematics
  • Medicine(all)

Cite this

The genome sequence of methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the methanosarcinaceae inhabiting freshwater and saline environments. / Spring, Stefan; Scheuner, Carmen; Lapidus, Alla; Lucas, Susan; Glavina Del Rio, Tijana; Tice, Hope; Copeland, Alex; Cheng, Jan Fang; Chen, Feng; Nolan, Matt; Saunders, Elizabeth; Pitluck, Sam; Liolios, Konstantinos; Ivanova, Natalia; Mavromatis, Konstantinos; Lykidis, Athanasios; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Goodwin, Lynne; Detter, John C.; Brettin, Thomas; Rohde, Manfred; Göker, Markus; Woyke, Tanja; Bristow, Jim; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

In: Archaea, Vol. 2010, 690737, 2010.

Research output: Contribution to journalArticle

Spring, S, Scheuner, C, Lapidus, A, Lucas, S, Glavina Del Rio, T, Tice, H, Copeland, A, Cheng, JF, Chen, F, Nolan, M, Saunders, E, Pitluck, S, Liolios, K, Ivanova, N, Mavromatis, K, Lykidis, A, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Goodwin, L, Detter, JC, Brettin, T, Rohde, M, Göker, M, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2010, 'The genome sequence of methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the methanosarcinaceae inhabiting freshwater and saline environments', Archaea, vol. 2010, 690737. https://doi.org/10.1155/2010/690737
Spring, Stefan ; Scheuner, Carmen ; Lapidus, Alla ; Lucas, Susan ; Glavina Del Rio, Tijana ; Tice, Hope ; Copeland, Alex ; Cheng, Jan Fang ; Chen, Feng ; Nolan, Matt ; Saunders, Elizabeth ; Pitluck, Sam ; Liolios, Konstantinos ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Lykidis, Athanasios ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Goodwin, Lynne ; Detter, John C. ; Brettin, Thomas ; Rohde, Manfred ; Göker, Markus ; Woyke, Tanja ; Bristow, Jim ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / The genome sequence of methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the methanosarcinaceae inhabiting freshwater and saline environments. In: Archaea. 2010 ; Vol. 2010.
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