Site-directed mutant libraries for isolating minimal mutations yielding functional changes

Dong Hee Chung, Sarah C. Potter, Ammon C. Tanomrat, Krishnakumar M. Ravikumar, Michael D. Toney

Research output: Contribution to journalArticle

2 Citations (Scopus)

Abstract

Powerful, facile new ways to create libraries of site-directed mutants are demonstrated. These include: (1) one-pot-PCR, (2) multi-pot-PCR, and (3) split-mix-PCR. One-pot-PCR uses mutant oligonucleotides to generate megaprimers in situ, and it was used to randomly incorporate 28 mutations in a gabT gene in a single reaction. In more difficult cases, multi-pot-PCR can be employed: mutant megaprimers are synthesized individually, then combined in a single mutagenesis PCR. This method was used to incorporate 14 out of 15 mutations in a pabB gene. Splitmix- PCR is a conceptually novel method for creation of site-directed mutant libraries. Separate PCRs for each mutant primer are performed, followed by pooling the products of the individual reactions. The pooled mixture is re-aliquoted into individual mutant oligonucleotide PCRs. These steps are repeated for each cycle. Split-mix-PCR results in a nearly random distribution of mutation sites, and a distribution of number-of-mutations per gene that is computable and narrow. Split-mix-PCR was applied to the directed evolution of aminodeoxychorismate synthase into anthranilate synthase, and easily allowed the determination of the fewest mutations required for introduction of novel activity.

Original languageEnglish (US)
Pages (from-to)347-357
Number of pages11
JournalProtein Engineering, Design and Selection
Volume30
Issue number5
DOIs
StatePublished - May 1 2017

Fingerprint

Genes
Oligonucleotides
Polymerase Chain Reaction
Mutation
Anthranilate Synthase
Mutagenesis
Libraries
aminodeoxychorismate synthase

Keywords

  • mutant library
  • protein engineering
  • reaction specificity
  • site-directed mutagenesis

ASJC Scopus subject areas

  • Biotechnology
  • Bioengineering
  • Medicine(all)
  • Biochemistry
  • Molecular Biology

Cite this

Site-directed mutant libraries for isolating minimal mutations yielding functional changes. / Chung, Dong Hee; Potter, Sarah C.; Tanomrat, Ammon C.; Ravikumar, Krishnakumar M.; Toney, Michael D.

In: Protein Engineering, Design and Selection, Vol. 30, No. 5, 01.05.2017, p. 347-357.

Research output: Contribution to journalArticle

Chung, Dong Hee ; Potter, Sarah C. ; Tanomrat, Ammon C. ; Ravikumar, Krishnakumar M. ; Toney, Michael D. / Site-directed mutant libraries for isolating minimal mutations yielding functional changes. In: Protein Engineering, Design and Selection. 2017 ; Vol. 30, No. 5. pp. 347-357.
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