Sequence comparison of pigeon circoviruses

D. Todd, E. Fringuelli, A. N J Scott, B. J. Borghmans, J. P. Duchatel, H L Shivaprasad, S. R. Raidal, J. X. Abadie, M. P. Franciosini, J. A. Smyth

Research output: Contribution to journalArticle

25 Citations (Scopus)

Abstract

The genome sequences of eight pigeon circoviruses (PiCV) were determined and compared with four previously published sequences. The viruses compared were from the USA, five European countries, China and Australia and included PiCVs from racing, feral, ornamental and meat pigeons and a Senegal dove (Streptopelia senegalensis). The 12 PiCV genomes, ranging from 2032 to 2040 nucleotides in length, displayed similar organizations. Pairwise comparisons showed that the genome nucleotide sequence identities ranged from 85.1% to 97.8% and that the amino acid identities of the putative replication associated (Rep) and putative capsid (Cap) proteins displayed ranges of 91.5-99.1% and 73.0-99.3%, respectively. Comparative analyses identified conserved nucleotide sequences within the Rep gene and 3′ intergenic regions, which would be suitable for diagnostic PCR primers, and variable amino acid sequences within the capsid proteins, which should be considered when selecting virus isolates for vaccine development.

Original languageEnglish (US)
Pages (from-to)311-319
Number of pages9
JournalResearch in Veterinary Science
Volume84
Issue number2
DOIs
StatePublished - Apr 2008

Fingerprint

Pigeon circovirus
Circovirus
Columbidae
Capsid Proteins
Genome
coat proteins
genome
Streptopelia
Viruses
nucleotide sequences
Senegal
viruses
Intergenic DNA
doves
Conserved Sequence
vaccine development
intergenic DNA
pigeons
Meat
Amino Acid Sequence

Keywords

  • Circovirus
  • Pigeon
  • Senegal dove
  • Sequence diversity

ASJC Scopus subject areas

  • Animal Science and Zoology
  • veterinary(all)

Cite this

Todd, D., Fringuelli, E., Scott, A. N. J., Borghmans, B. J., Duchatel, J. P., Shivaprasad, H. L., ... Smyth, J. A. (2008). Sequence comparison of pigeon circoviruses. Research in Veterinary Science, 84(2), 311-319. https://doi.org/10.1016/j.rvsc.2007.03.007

Sequence comparison of pigeon circoviruses. / Todd, D.; Fringuelli, E.; Scott, A. N J; Borghmans, B. J.; Duchatel, J. P.; Shivaprasad, H L; Raidal, S. R.; Abadie, J. X.; Franciosini, M. P.; Smyth, J. A.

In: Research in Veterinary Science, Vol. 84, No. 2, 04.2008, p. 311-319.

Research output: Contribution to journalArticle

Todd, D, Fringuelli, E, Scott, ANJ, Borghmans, BJ, Duchatel, JP, Shivaprasad, HL, Raidal, SR, Abadie, JX, Franciosini, MP & Smyth, JA 2008, 'Sequence comparison of pigeon circoviruses', Research in Veterinary Science, vol. 84, no. 2, pp. 311-319. https://doi.org/10.1016/j.rvsc.2007.03.007
Todd D, Fringuelli E, Scott ANJ, Borghmans BJ, Duchatel JP, Shivaprasad HL et al. Sequence comparison of pigeon circoviruses. Research in Veterinary Science. 2008 Apr;84(2):311-319. https://doi.org/10.1016/j.rvsc.2007.03.007
Todd, D. ; Fringuelli, E. ; Scott, A. N J ; Borghmans, B. J. ; Duchatel, J. P. ; Shivaprasad, H L ; Raidal, S. R. ; Abadie, J. X. ; Franciosini, M. P. ; Smyth, J. A. / Sequence comparison of pigeon circoviruses. In: Research in Veterinary Science. 2008 ; Vol. 84, No. 2. pp. 311-319.
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