Resources for genetic management and genomics research on non-human primates at the National Primate Research Centers (NPRCs)

S. Kanthaswamy, J. P. Capitanio, C. J. Dubay, B. Ferguson, T. Folks, J. C. Ha, C. E. Hotchkiss, Z. P. Johnson, M. G. Katze, L. S. Kean, H. Michael Kubisch, S. Lank, Leslie A Lyons, G. M. Miller, J. Nylander, D. H. O'Connor, R. E. Palermo, D. G. Smith, E. J. Vallender, R. W. Wiseman & 1 others J. Rogers

Research output: Contribution to journalArticle

22 Citations (Scopus)

Abstract

The National Primate Research Centers (NPRCs) established Working Groups (WGs) for developing resources and mechanisms to facilitate collaborations among non-human primate (NHP) researchers. Here we report the progress of the Genome Banking and the Genetics and Genomics WGs in developing resources to advance the exchange, analysis and comparison of NHP genetic and genomic data across the NPRCs.The Genome Banking WG has established a National NHP DNA bank comprising 1250 DNA samples from unrelated animals and family trios from the 10 NHP species housed within the NPRC system. The Genetics and Genomics WG is developing SNP arrays that will provide a uniform, highly informative, efficient and low-cost method for rhesus and long-tailed macaque genotyping across the eight NPRCs. This WG is also establishing a Biomedical Informatics Research Network-based portal for shared bioinformatics resources including vital statistics, genotype and population data and information on the National NHP DNA bank.

Original languageEnglish (US)
Pages (from-to)17-23
Number of pages7
JournalJournal of Medical Primatology
Volume38
Issue numberSUPPL. 1
DOIs
StatePublished - Oct 2009

Fingerprint

Genomics
genetic resources
Primates
genomics
Research
banking
DNA
Genome
Vital Statistics
Informatics
genome
Macaca
Computational Biology
bioinformatics
genotyping
Single Nucleotide Polymorphism
Biomedical Research
demographic statistics
researchers
Genotype

Keywords

  • Ancestry estimation
  • Biomedical information research network
  • Databases
  • DNA bank
  • Genotype data
  • Information systems
  • Parentage testing
  • Population genetics
  • Single nucleotide polymorphisms
  • Web portal

ASJC Scopus subject areas

  • Animal Science and Zoology
  • veterinary(all)

Cite this

Resources for genetic management and genomics research on non-human primates at the National Primate Research Centers (NPRCs). / Kanthaswamy, S.; Capitanio, J. P.; Dubay, C. J.; Ferguson, B.; Folks, T.; Ha, J. C.; Hotchkiss, C. E.; Johnson, Z. P.; Katze, M. G.; Kean, L. S.; Michael Kubisch, H.; Lank, S.; Lyons, Leslie A; Miller, G. M.; Nylander, J.; O'Connor, D. H.; Palermo, R. E.; Smith, D. G.; Vallender, E. J.; Wiseman, R. W.; Rogers, J.

In: Journal of Medical Primatology, Vol. 38, No. SUPPL. 1, 10.2009, p. 17-23.

Research output: Contribution to journalArticle

Kanthaswamy, S, Capitanio, JP, Dubay, CJ, Ferguson, B, Folks, T, Ha, JC, Hotchkiss, CE, Johnson, ZP, Katze, MG, Kean, LS, Michael Kubisch, H, Lank, S, Lyons, LA, Miller, GM, Nylander, J, O'Connor, DH, Palermo, RE, Smith, DG, Vallender, EJ, Wiseman, RW & Rogers, J 2009, 'Resources for genetic management and genomics research on non-human primates at the National Primate Research Centers (NPRCs)', Journal of Medical Primatology, vol. 38, no. SUPPL. 1, pp. 17-23. https://doi.org/10.1111/j.1600-0684.2009.00371.x
Kanthaswamy, S. ; Capitanio, J. P. ; Dubay, C. J. ; Ferguson, B. ; Folks, T. ; Ha, J. C. ; Hotchkiss, C. E. ; Johnson, Z. P. ; Katze, M. G. ; Kean, L. S. ; Michael Kubisch, H. ; Lank, S. ; Lyons, Leslie A ; Miller, G. M. ; Nylander, J. ; O'Connor, D. H. ; Palermo, R. E. ; Smith, D. G. ; Vallender, E. J. ; Wiseman, R. W. ; Rogers, J. / Resources for genetic management and genomics research on non-human primates at the National Primate Research Centers (NPRCs). In: Journal of Medical Primatology. 2009 ; Vol. 38, No. SUPPL. 1. pp. 17-23.
@article{f0844b2e818644b583c963af7b007ba2,
title = "Resources for genetic management and genomics research on non-human primates at the National Primate Research Centers (NPRCs)",
abstract = "The National Primate Research Centers (NPRCs) established Working Groups (WGs) for developing resources and mechanisms to facilitate collaborations among non-human primate (NHP) researchers. Here we report the progress of the Genome Banking and the Genetics and Genomics WGs in developing resources to advance the exchange, analysis and comparison of NHP genetic and genomic data across the NPRCs.The Genome Banking WG has established a National NHP DNA bank comprising 1250 DNA samples from unrelated animals and family trios from the 10 NHP species housed within the NPRC system. The Genetics and Genomics WG is developing SNP arrays that will provide a uniform, highly informative, efficient and low-cost method for rhesus and long-tailed macaque genotyping across the eight NPRCs. This WG is also establishing a Biomedical Informatics Research Network-based portal for shared bioinformatics resources including vital statistics, genotype and population data and information on the National NHP DNA bank.",
keywords = "Ancestry estimation, Biomedical information research network, Databases, DNA bank, Genotype data, Information systems, Parentage testing, Population genetics, Single nucleotide polymorphisms, Web portal",
author = "S. Kanthaswamy and Capitanio, {J. P.} and Dubay, {C. J.} and B. Ferguson and T. Folks and Ha, {J. C.} and Hotchkiss, {C. E.} and Johnson, {Z. P.} and Katze, {M. G.} and Kean, {L. S.} and {Michael Kubisch}, H. and S. Lank and Lyons, {Leslie A} and Miller, {G. M.} and J. Nylander and O'Connor, {D. H.} and Palermo, {R. E.} and Smith, {D. G.} and Vallender, {E. J.} and Wiseman, {R. W.} and J. Rogers",
year = "2009",
month = "10",
doi = "10.1111/j.1600-0684.2009.00371.x",
language = "English (US)",
volume = "38",
pages = "17--23",
journal = "Journal of Medical Primatology",
issn = "0047-2565",
publisher = "Blackwell Munksgaard",
number = "SUPPL. 1",

}

TY - JOUR

T1 - Resources for genetic management and genomics research on non-human primates at the National Primate Research Centers (NPRCs)

AU - Kanthaswamy, S.

AU - Capitanio, J. P.

AU - Dubay, C. J.

AU - Ferguson, B.

AU - Folks, T.

AU - Ha, J. C.

AU - Hotchkiss, C. E.

AU - Johnson, Z. P.

AU - Katze, M. G.

AU - Kean, L. S.

AU - Michael Kubisch, H.

AU - Lank, S.

AU - Lyons, Leslie A

AU - Miller, G. M.

AU - Nylander, J.

AU - O'Connor, D. H.

AU - Palermo, R. E.

AU - Smith, D. G.

AU - Vallender, E. J.

AU - Wiseman, R. W.

AU - Rogers, J.

PY - 2009/10

Y1 - 2009/10

N2 - The National Primate Research Centers (NPRCs) established Working Groups (WGs) for developing resources and mechanisms to facilitate collaborations among non-human primate (NHP) researchers. Here we report the progress of the Genome Banking and the Genetics and Genomics WGs in developing resources to advance the exchange, analysis and comparison of NHP genetic and genomic data across the NPRCs.The Genome Banking WG has established a National NHP DNA bank comprising 1250 DNA samples from unrelated animals and family trios from the 10 NHP species housed within the NPRC system. The Genetics and Genomics WG is developing SNP arrays that will provide a uniform, highly informative, efficient and low-cost method for rhesus and long-tailed macaque genotyping across the eight NPRCs. This WG is also establishing a Biomedical Informatics Research Network-based portal for shared bioinformatics resources including vital statistics, genotype and population data and information on the National NHP DNA bank.

AB - The National Primate Research Centers (NPRCs) established Working Groups (WGs) for developing resources and mechanisms to facilitate collaborations among non-human primate (NHP) researchers. Here we report the progress of the Genome Banking and the Genetics and Genomics WGs in developing resources to advance the exchange, analysis and comparison of NHP genetic and genomic data across the NPRCs.The Genome Banking WG has established a National NHP DNA bank comprising 1250 DNA samples from unrelated animals and family trios from the 10 NHP species housed within the NPRC system. The Genetics and Genomics WG is developing SNP arrays that will provide a uniform, highly informative, efficient and low-cost method for rhesus and long-tailed macaque genotyping across the eight NPRCs. This WG is also establishing a Biomedical Informatics Research Network-based portal for shared bioinformatics resources including vital statistics, genotype and population data and information on the National NHP DNA bank.

KW - Ancestry estimation

KW - Biomedical information research network

KW - Databases

KW - DNA bank

KW - Genotype data

KW - Information systems

KW - Parentage testing

KW - Population genetics

KW - Single nucleotide polymorphisms

KW - Web portal

UR - http://www.scopus.com/inward/record.url?scp=70350600575&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=70350600575&partnerID=8YFLogxK

U2 - 10.1111/j.1600-0684.2009.00371.x

DO - 10.1111/j.1600-0684.2009.00371.x

M3 - Article

VL - 38

SP - 17

EP - 23

JO - Journal of Medical Primatology

JF - Journal of Medical Primatology

SN - 0047-2565

IS - SUPPL. 1

ER -