Reevaluation of the evolutionary events within recA/RAD51 phylogeny

Sree V. Chintapalli, Gaurav Bhardwaj, Jagadish Babu, Loukia Hadjiyianni, Yoojin Hong, George K. Todd, Casey A. Boosalis, Zhenhai Zhang, Xiaofan Zhou, Hong Ma, Andriy Anishkin, Damian B. van Rossum, Randen L. Patterson

Research output: Contribution to journalArticle

15 Scopus citations

Abstract

Background: The recA/RAD51 gene family encodes a diverse set of recombinase proteins that affect homologous recombination, DNA-repair, and genome stability. The recA gene family is expressed across all three domains of life - Eubacteria, Archaea, and Eukaryotes - and even in some viruses. To date, efforts to resolve the deep evolutionary origins of this ancient protein family have been hindered by the high sequence divergence between paralogous groups (i.e. ~30% average pairwise identity).Results: Through large taxon sampling and the use of a phylogenetic algorithm designed for inferring evolutionary events in highly divergent paralogs, we obtained a robust, parsimonious and more refined phylogenetic history of the recA/RAD51 superfamily.Conclusions: In summary, our model for the evolution of recA/RAD51 family provides a better understanding of the ancient origin of recA proteins and the multiple events that lead to the diversification of recA homologs in eukaryotes, including the discovery of additional RAD51 sub-families.

Original languageEnglish (US)
Article number240
JournalBMC Genomics
Volume14
Issue number1
DOIs
StatePublished - Apr 10 2013

Keywords

  • Phylogenetic inference
  • RAD51
  • recA
  • Recombinase

ASJC Scopus subject areas

  • Biotechnology
  • Genetics

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    Chintapalli, S. V., Bhardwaj, G., Babu, J., Hadjiyianni, L., Hong, Y., Todd, G. K., Boosalis, C. A., Zhang, Z., Zhou, X., Ma, H., Anishkin, A., van Rossum, D. B., & Patterson, R. L. (2013). Reevaluation of the evolutionary events within recA/RAD51 phylogeny. BMC Genomics, 14(1), [240]. https://doi.org/10.1186/1471-2164-14-240