Quantitative real-time PCR for rhinovirus, and its use in determining the relationship between TCID50 and the number of viral particles

Lorne A. Sachs, David Schnurr, Shigeo Yagi, Marrah E. Lachowicz-Scroggins, Jonathan Widdicombe

Research output: Contribution to journalArticle

21 Citations (Scopus)

Abstract

The development of a quantitative real-time PCR (qPCR) assay for human rhinovirus serotype 16 (HRV16) is described using the plasmid pR16.11, which contains the full-length genome of HRV16. A standard curve was generated by plotting the critical threshold (Ct) against numbers of plasmid. The limit of sensitivity was less than10 cDNA copies, and the curve showed a high degree of linearity over a range of 101 to 106 cDNA copies with r2≥0.9989. Amplification efficiency of the qPCR was greater than 97.6 percent. The standard curve was highly reproducible with low intra- and inter-assay coefficients of variation. Standard curves were also generated from cDNA derived from two viral suspensions of known TCID50, and were exactly parallel to those generated from the plasmid. Comparison of the curves generated from the plasmid or viral cDNA showed that for the two suspensions, TCID50 corresponded to either 142 or 2088 viral particles. This new qPCR will permit quantitative assessments of interactions between virus and epithelium such as determinations of the affinity and number of viral binding sites or of the number of virus produced per infected cell.

Original languageEnglish (US)
Pages (from-to)212-218
Number of pages7
JournalJournal of Virological Methods
Volume171
Issue number1
DOIs
StatePublished - Jan 2011

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Rhinovirus
Virion
Real-Time Polymerase Chain Reaction
Plasmids
Complementary DNA
Suspensions
Viruses
Human Genome
Epithelium
Binding Sites
Serogroup

Keywords

  • Airway epithelium
  • Quantitative PCR
  • Rhinovirus
  • TCID

ASJC Scopus subject areas

  • Virology

Cite this

Quantitative real-time PCR for rhinovirus, and its use in determining the relationship between TCID50 and the number of viral particles. / Sachs, Lorne A.; Schnurr, David; Yagi, Shigeo; Lachowicz-Scroggins, Marrah E.; Widdicombe, Jonathan.

In: Journal of Virological Methods, Vol. 171, No. 1, 01.2011, p. 212-218.

Research output: Contribution to journalArticle

Sachs, Lorne A. ; Schnurr, David ; Yagi, Shigeo ; Lachowicz-Scroggins, Marrah E. ; Widdicombe, Jonathan. / Quantitative real-time PCR for rhinovirus, and its use in determining the relationship between TCID50 and the number of viral particles. In: Journal of Virological Methods. 2011 ; Vol. 171, No. 1. pp. 212-218.
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