Plantmetabolomics.org: A web portal for plant metabolomics experiments

Preeti Bais, Stephanie M. Moon, Kun He, Ricardo Leitao, Kate Dreher, Tom Walk, Yves Sucaet, Lenore Barkan, Gert Wohlgemuth, Mary R. Roth, Eve Syrkin Wurtele, Philip Dixon, Oliver Fiehn, B. Markus Lange, Vladimir Shulaev, Lloyd W. Sumner, Ruth Welti, Basil J. Nikolau, Seung Y. Rhee, Julie A. Dickerson

Research output: Contribution to journalArticle

78 Scopus citations

Abstract

PlantMetabolomics.org (PM) is a web portal and database for exploring, visualizing, and downloading plant metabolomics data. Widespread public access to well-annotated metabolomics datasets is essential for establishing metabolomics as a functional genomics tool. PM integrates metabolomics data generated from different analytical platforms from multiple laboratories along with the key visualization tools such as ratio and error plots. Visualization tools can quickly show how one condition compares to another and which analytical platforms show the largest changes. The database tries to capture a complete annotation of the experiment metadata along with the metabolite abundance databased on the evolving Meta-bolomics Standards Initiative. PM can be used as a platform for deriving hypotheses by enabling metabolomic comparisons between genetically unique Arabidopsis (Arabidopsis thaliana) populations subjected to different environmental conditions. Each metabolite is linked to relevant experimental data and information from various annotation databases. The portal also provides detailed protocols and tutorials on conducting plant metabolomics experiments to promote metabolomics in the community. PM currently houses Arabidopsis metabolomics data generated by a consortium of laboratories utilizing metabolomics to help elucidate the functions of uncharacterized genes. PM is publicly available at http://www.plantmetabolomics.org.

Original languageEnglish (US)
Pages (from-to)1807-1816
Number of pages10
JournalPlant Physiology
Volume152
Issue number4
DOIs
StatePublished - Apr 2010

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ASJC Scopus subject areas

  • Plant Science
  • Genetics
  • Physiology

Cite this

Bais, P., Moon, S. M., He, K., Leitao, R., Dreher, K., Walk, T., Sucaet, Y., Barkan, L., Wohlgemuth, G., Roth, M. R., Wurtele, E. S., Dixon, P., Fiehn, O., Lange, B. M., Shulaev, V., Sumner, L. W., Welti, R., Nikolau, B. J., Rhee, S. Y., & Dickerson, J. A. (2010). Plantmetabolomics.org: A web portal for plant metabolomics experiments. Plant Physiology, 152(4), 1807-1816. https://doi.org/10.1104/pp.109.151027