Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1)

Konstantinos Mavromatis, Olga Chertkov, Alla Lapidus, Matt Nolan, Susan Lucas, Hope Tice, Tijana Glavina Del Rio, Jan Fang Cheng, Cliff Han, Roxanne Tapia, David Bruce, Lynne A. Goodwin, Sam Pitluck, Marcel Huntemann, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy ChenKrishna Palaniappan, Miriam Land, Evelyne Marie Brambilla, Manfred Rohde, Stefan Spring, Markus Göker, John C. Detter, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Tanja Woyke

Research output: Contribution to journalArticle

1 Citation (Scopus)

Abstract

Saprospira grandis Gross 1911 is a member of the Saprospiraceae, a family in the class 'Sphingobacteria' that remains poorly characterized at the genomic level. The species is known for preying on other marine bacteria via 'ixotrophy'. S. grandis strain Sa g1 was isolated from decaying crab carapace in France and was selected for genome sequencing because of its isolated location in the tree of life. Only one type strain genome has been published so far from the Saprospiraceae, while the sequence of strain Sa g1 represents the second genome to be published from a non-type strain of S. grandis. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,495,250 bp long Improved-High-Quality draft of the genome with its 3,536 pro-tein-coding and 62 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)210-219
Number of pages10
JournalStandards in Genomic Sciences
Volume6
Issue number2
DOIs
StatePublished - 2012

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Genome
Animal Shells
Sphingobacterium
Encyclopedias
Bacteria
Archaea
France
RNA
Genes

Keywords

  • Chemoorganotrophic
  • GEBA
  • Gliding
  • Gram-negative
  • Ixotrophy
  • Marine
  • Mesophilic
  • Saprospiraceae
  • Strictly aerobic

ASJC Scopus subject areas

  • Genetics

Cite this

Mavromatis, K., Chertkov, O., Lapidus, A., Nolan, M., Lucas, S., Tice, H., ... Woyke, T. (2012). Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1). Standards in Genomic Sciences, 6(2), 210-219. https://doi.org/10.4056/sigs.2816096

Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1). / Mavromatis, Konstantinos; Chertkov, Olga; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Tice, Hope; Del Rio, Tijana Glavina; Cheng, Jan Fang; Han, Cliff; Tapia, Roxanne; Bruce, David; Goodwin, Lynne A.; Pitluck, Sam; Huntemann, Marcel; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Brambilla, Evelyne Marie; Rohde, Manfred; Spring, Stefan; Göker, Markus; Detter, John C.; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Woyke, Tanja.

In: Standards in Genomic Sciences, Vol. 6, No. 2, 2012, p. 210-219.

Research output: Contribution to journalArticle

Mavromatis, K, Chertkov, O, Lapidus, A, Nolan, M, Lucas, S, Tice, H, Del Rio, TG, Cheng, JF, Han, C, Tapia, R, Bruce, D, Goodwin, LA, Pitluck, S, Huntemann, M, Liolios, K, Pagani, I, Ivanova, N, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Brambilla, EM, Rohde, M, Spring, S, Göker, M, Detter, JC, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Woyke, T 2012, 'Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1)', Standards in Genomic Sciences, vol. 6, no. 2, pp. 210-219. https://doi.org/10.4056/sigs.2816096
Mavromatis, Konstantinos ; Chertkov, Olga ; Lapidus, Alla ; Nolan, Matt ; Lucas, Susan ; Tice, Hope ; Del Rio, Tijana Glavina ; Cheng, Jan Fang ; Han, Cliff ; Tapia, Roxanne ; Bruce, David ; Goodwin, Lynne A. ; Pitluck, Sam ; Huntemann, Marcel ; Liolios, Konstantinos ; Pagani, Ioanna ; Ivanova, Natalia ; Mikhailova, Natalia ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Brambilla, Evelyne Marie ; Rohde, Manfred ; Spring, Stefan ; Göker, Markus ; Detter, John C. ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Woyke, Tanja. / Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1). In: Standards in Genomic Sciences. 2012 ; Vol. 6, No. 2. pp. 210-219.
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