Nucleotide specificity of DNA binding of the aryl hydrocarbon receptor

ARNT complex is unaffected by ligand structure

Danica E. DeGroot, Michael S. Denison

Research output: Contribution to journalArticle

6 Citations (Scopus)

Abstract

The aryl hydrocarbon receptor (AhR) is a ligand-activated transcription factor that mediates the toxic and biological effects of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD, dioxin) and a wide variety of structurally diverse ligands through its ability to translocate into the nucleus and bind to a specific DNA recognition site (the dioxin-responsive element [DRE]) adjacent to responsive genes. Although the sequence of the DRE is well defined, several reports suggested that the nucleotide specificity of AhR DNA binding may vary depending on the structure of its bound ligand. Given the potential toxicological significance of this hypothesis, an unbiased DNA-selection-and-PCR-amplification approach was utilized to directly determine whether binding and activation of the AhR by structurally diverse agonists alter its nucleotide specificity of DNA binding. Guinea pig hepatic cytosolic AhR activated in vitro by equipotent concentrations of TCDD, 3-methylcholanthrene, β-naphthoflavone, indirubin, L-kynurenine, or YH439 was incubated with a pool of DNA oligonucleotides containing a 15-base pair variable region consisting of all possible nucleotides. The AhR-bound oligonucleotides isolated by immunoprecipitation were PCR amplified and used in subsequent rounds of selection. Sequence analysis of a total of 196 isolated oligonucleotides revealed that each ligand-activated AhR:ARNT complex only bound to DRE-containing DNA oligonucleotides; no non-DRE-containing DNA oligonucleotides were identified. These results demonstrate that the binding and activation of the AhR by structurally diverse agonists do not appear to alter its nucleotide specificity of DNA binding and suggest that stimulation of gene expression mediated by direct DNA binding of ligand-activated AhR:ARNT complexes is DRE dependent.

Original languageEnglish (US)
Pages (from-to)102-113
Number of pages12
JournalToxicological Sciences
Volume137
Issue number1
DOIs
StatePublished - Jan 2014

Fingerprint

Aryl Hydrocarbon Receptors
Nucleotides
Ligands
Dioxins
DNA
Oligonucleotides
Chemical activation
Kynurenine
Polymerase Chain Reaction
Methylcholanthrene
Poisons
Immunoprecipitation
Gene expression
Base Pairing
Toxicology
Amplification
Sequence Analysis
Guinea Pigs
Transcription Factors
Genes

Keywords

  • Ah receptor
  • Dioxin
  • DRE
  • TCDD

ASJC Scopus subject areas

  • Toxicology

Cite this

Nucleotide specificity of DNA binding of the aryl hydrocarbon receptor : ARNT complex is unaffected by ligand structure. / DeGroot, Danica E.; Denison, Michael S.

In: Toxicological Sciences, Vol. 137, No. 1, 01.2014, p. 102-113.

Research output: Contribution to journalArticle

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