Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20 t)

Amrita Pati, Sabine Gronow, Megan Lu, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Konstantinos Mavromatis, Natalia Mikhailova, Marcel Huntemann, Amy Chen, Krishna PalaniappanMiriam Land, Loren Hauser, John C. Detter, Evelyne Marie Brambilla, Manfred Rohde, Markus Göker, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Natalia Ivanova

Research output: Contribution to journalArticle

1 Citation (Scopus)

Abstract

Prevotella multisaccharivorax Sakamoto et al. 2005 is a species of the large genus Prevotella, which belongs to the family Prevotellaceae. The species is of medical interest because its members are able to cause diseases in the human oral cavity such as periodontitis, root caries and others. Although 77 Prevotella genomes have already been sequenced or are targeted for sequencing, this is only the second completed genome sequence of a type strain of a species within the genus Prevotella to be published. The 3,388,644 bp long genome is assembled in three non-contiguous contigs, harbors 2,876 protein-coding and 75 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)41-49
Number of pages9
JournalStandards in Genomic Sciences
Volume5
Issue number1
DOIs
StatePublished - 2011

Fingerprint

Prevotella
Genome
Root Caries
Encyclopedias
Periodontitis
Archaea
Mouth
RNA
Bacteria
Genes
Proteins

Keywords

  • Chemoorganotroph-ic
  • GEBA
  • Gram-negative
  • Mesophilic
  • Non-motile
  • Obligately anaerobic
  • Opportunistic pathogen
  • Prevotellaceae

ASJC Scopus subject areas

  • Genetics

Cite this

Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20 t). / Pati, Amrita; Gronow, Sabine; Lu, Megan; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan Fang; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Mavromatis, Konstantinos; Mikhailova, Natalia; Huntemann, Marcel; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Detter, John C.; Brambilla, Evelyne Marie; Rohde, Manfred; Göker, Markus; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Ivanova, Natalia.

In: Standards in Genomic Sciences, Vol. 5, No. 1, 2011, p. 41-49.

Research output: Contribution to journalArticle

Pati, A, Gronow, S, Lu, M, Lapidus, A, Nolan, M, Lucas, S, Hammon, N, Deshpande, S, Cheng, JF, Tapia, R, Han, C, Goodwin, L, Pitluck, S, Liolios, K, Pagani, I, Mavromatis, K, Mikhailova, N, Huntemann, M, Chen, A, Palaniappan, K, Land, M, Hauser, L, Detter, JC, Brambilla, EM, Rohde, M, Göker, M, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Ivanova, N 2011, 'Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20 t)', Standards in Genomic Sciences, vol. 5, no. 1, pp. 41-49. https://doi.org/10.4056/sigs.2164949
Pati, Amrita ; Gronow, Sabine ; Lu, Megan ; Lapidus, Alla ; Nolan, Matt ; Lucas, Susan ; Hammon, Nancy ; Deshpande, Shweta ; Cheng, Jan Fang ; Tapia, Roxanne ; Han, Cliff ; Goodwin, Lynne ; Pitluck, Sam ; Liolios, Konstantinos ; Pagani, Ioanna ; Mavromatis, Konstantinos ; Mikhailova, Natalia ; Huntemann, Marcel ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Detter, John C. ; Brambilla, Evelyne Marie ; Rohde, Manfred ; Göker, Markus ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Ivanova, Natalia. / Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20 t). In: Standards in Genomic Sciences. 2011 ; Vol. 5, No. 1. pp. 41-49.
@article{dab5293fd1d2430d94734930932ea7cc,
title = "Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20 t)",
abstract = "Prevotella multisaccharivorax Sakamoto et al. 2005 is a species of the large genus Prevotella, which belongs to the family Prevotellaceae. The species is of medical interest because its members are able to cause diseases in the human oral cavity such as periodontitis, root caries and others. Although 77 Prevotella genomes have already been sequenced or are targeted for sequencing, this is only the second completed genome sequence of a type strain of a species within the genus Prevotella to be published. The 3,388,644 bp long genome is assembled in three non-contiguous contigs, harbors 2,876 protein-coding and 75 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Chemoorganotroph-ic, GEBA, Gram-negative, Mesophilic, Non-motile, Obligately anaerobic, Opportunistic pathogen, Prevotellaceae",
author = "Amrita Pati and Sabine Gronow and Megan Lu and Alla Lapidus and Matt Nolan and Susan Lucas and Nancy Hammon and Shweta Deshpande and Cheng, {Jan Fang} and Roxanne Tapia and Cliff Han and Lynne Goodwin and Sam Pitluck and Konstantinos Liolios and Ioanna Pagani and Konstantinos Mavromatis and Natalia Mikhailova and Marcel Huntemann and Amy Chen and Krishna Palaniappan and Miriam Land and Loren Hauser and Detter, {John C.} and Brambilla, {Evelyne Marie} and Manfred Rohde and Markus G{\"o}ker and Tanja Woyke and James Bristow and Eisen, {Jonathan A} and Victor Markowitz and Philip Hugenholtz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter} and Natalia Ivanova",
year = "2011",
doi = "10.4056/sigs.2164949",
language = "English (US)",
volume = "5",
pages = "41--49",
journal = "Environmental Microbiomes",
issn = "1944-3277",
publisher = "BioMed Central Ltd.",
number = "1",

}

TY - JOUR

T1 - Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20 t)

AU - Pati, Amrita

AU - Gronow, Sabine

AU - Lu, Megan

AU - Lapidus, Alla

AU - Nolan, Matt

AU - Lucas, Susan

AU - Hammon, Nancy

AU - Deshpande, Shweta

AU - Cheng, Jan Fang

AU - Tapia, Roxanne

AU - Han, Cliff

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Liolios, Konstantinos

AU - Pagani, Ioanna

AU - Mavromatis, Konstantinos

AU - Mikhailova, Natalia

AU - Huntemann, Marcel

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Detter, John C.

AU - Brambilla, Evelyne Marie

AU - Rohde, Manfred

AU - Göker, Markus

AU - Woyke, Tanja

AU - Bristow, James

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

AU - Ivanova, Natalia

PY - 2011

Y1 - 2011

N2 - Prevotella multisaccharivorax Sakamoto et al. 2005 is a species of the large genus Prevotella, which belongs to the family Prevotellaceae. The species is of medical interest because its members are able to cause diseases in the human oral cavity such as periodontitis, root caries and others. Although 77 Prevotella genomes have already been sequenced or are targeted for sequencing, this is only the second completed genome sequence of a type strain of a species within the genus Prevotella to be published. The 3,388,644 bp long genome is assembled in three non-contiguous contigs, harbors 2,876 protein-coding and 75 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Prevotella multisaccharivorax Sakamoto et al. 2005 is a species of the large genus Prevotella, which belongs to the family Prevotellaceae. The species is of medical interest because its members are able to cause diseases in the human oral cavity such as periodontitis, root caries and others. Although 77 Prevotella genomes have already been sequenced or are targeted for sequencing, this is only the second completed genome sequence of a type strain of a species within the genus Prevotella to be published. The 3,388,644 bp long genome is assembled in three non-contiguous contigs, harbors 2,876 protein-coding and 75 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Chemoorganotroph-ic

KW - GEBA

KW - Gram-negative

KW - Mesophilic

KW - Non-motile

KW - Obligately anaerobic

KW - Opportunistic pathogen

KW - Prevotellaceae

UR - http://www.scopus.com/inward/record.url?scp=80054856529&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=80054856529&partnerID=8YFLogxK

U2 - 10.4056/sigs.2164949

DO - 10.4056/sigs.2164949

M3 - Article

C2 - 22180809

AN - SCOPUS:80054856529

VL - 5

SP - 41

EP - 49

JO - Environmental Microbiomes

JF - Environmental Microbiomes

SN - 1944-3277

IS - 1

ER -