Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21 T)

Yun juan Chang, Miriam Land, Loren Hauser, Olga Chertkov, Tijana Glavina del Rio, Matt Nolan, Alex Copeland, Hope Tice, Jan Fang Cheng, Susan Lucas, Cliff Han, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Galina Ovchinikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Konstantinos Mavromatis, Konstantinos LioliosThomas Brettin, Anne Fiebig, Manfred Rohde, Birte Abt, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Alla Lapidus

Research output: Contribution to journalArticle

59 Scopus citations

Abstract

Ktedonobacter racemifer corrig. Cavaletti et al. 2007 is the type species of the genus Ktedo-nobacter, which in turn is the type genus of the family Ktedonobacteraceae, the type family of the order Ktedonobacterales within the class Ktedonobacteria in the phylum 'Chloroflexi'. Although K. racemifer shares some morphological features with the actinobacteria, it is of special interest because it was the first cultivated representative of a deep branching unclassi-fied lineage of otherwise uncultivated environmental phylotypes tentatively located within the phylum 'Chloroflexi'. The aerobic, filamentous, non-motile, spore-forming Gram-positive heterotroph was isolated from soil in Italy. The 13,661,586 bp long non-contiguous finished genome consists of ten contigs and is the first reported genome sequence from a member of the class Ktedonobacteria. With its 11,453 protein-coding and 87 RNA genes, it is the largest prokaryotic genome reported so far. It comprises a large number of over-represented COGs, particularly genes associated with transposons, causing the genetic redundancy within the genome being considerably larger than expected by chance. This work is a part of the Ge-nomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)97-111
Number of pages15
JournalStandards in Genomic Sciences
Volume5
Issue number1
DOIs
StatePublished - 2011

Keywords

  • Aerobic
  • Broken-stick distribution
  • Chloroflexi
  • Entropy
  • Filamentous
  • GEBA
  • Gram-positive
  • Heterotrophic
  • Ktedonobacteraceae
  • Moderately aci-dophilic
  • Non-motile
  • Sporulating
  • Transposon

ASJC Scopus subject areas

  • Genetics

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    Chang, Y. J., Land, M., Hauser, L., Chertkov, O., del Rio, T. G., Nolan, M., Copeland, A., Tice, H., Cheng, J. F., Lucas, S., Han, C., Goodwin, L., Pitluck, S., Ivanova, N., Ovchinikova, G., Pati, A., Chen, A., Palaniappan, K., Mavromatis, K., ... Lapidus, A. (2011). Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21 T). Standards in Genomic Sciences, 5(1), 97-111. https://doi.org/10.4056/sigs.2114901