Multi-dimensional studies of synthetic genetic promoters enabled by microfluidic impact printing

Jinzhen Fan, Fernando Villarreal, Brent Weyers, Yunfeng Ding, Kuo Hao Tseng, Jiannan Li, Baoqing Li, Cheemeng Tan, Tingrui Pan

Research output: Contribution to journalArticle

7 Citations (Scopus)

Abstract

Natural genetic promoters are regulated by multiple cis and trans regulatory factors. For quantitative studies of these promoters, the concentration of only a single factor is typically varied to obtain the dose response or transfer function of the promoters with respect to the factor. Such design of experiments has limited our ability to understand quantitative, combinatorial interactions between multiple regulatory factors at promoters. This limitation is primarily due to the intractable number of experimental combinations that arise from multifactorial design of experiments. To overcome this major limitation, we integrate impact printing and cell-free systems to enable multi-dimensional studies of genetic promoters. We first present a gradient printing system which comprises parallel piezoelectric cantilever beams as a scalable actuator array to generate droplets with tunable volumes in the range of 100 pL-10 nL, which facilitates highly accurate direct dilutions in the range of 1-10000-fold in a 1 μL drop. Next, we apply this technology to study interactions between three regulatory factors at a synthetic genetic promoter. Finally, a mathematical model of gene regulatory modules is established using the multi-parametric and multi-dimensional data. Our work creates a new frontier in the use of cell-free systems and droplet printing for multi-dimensional studies of synthetic genetic constructs.

Original languageEnglish (US)
Pages (from-to)2198-2207
Number of pages10
JournalLab on a Chip
Volume17
Issue number13
DOIs
StatePublished - Jan 1 2017

Fingerprint

Printing
Microfluidics
Genetic Promoter Regions
Cell-Free System
Design of experiments
Gene Regulatory Networks
Cantilever beams
Dilution
Transfer functions
Theoretical Models
Actuators
Genes
Mathematical models
Technology

ASJC Scopus subject areas

  • Bioengineering
  • Biochemistry
  • Chemistry(all)
  • Biomedical Engineering

Cite this

Multi-dimensional studies of synthetic genetic promoters enabled by microfluidic impact printing. / Fan, Jinzhen; Villarreal, Fernando; Weyers, Brent; Ding, Yunfeng; Tseng, Kuo Hao; Li, Jiannan; Li, Baoqing; Tan, Cheemeng; Pan, Tingrui.

In: Lab on a Chip, Vol. 17, No. 13, 01.01.2017, p. 2198-2207.

Research output: Contribution to journalArticle

Fan, J, Villarreal, F, Weyers, B, Ding, Y, Tseng, KH, Li, J, Li, B, Tan, C & Pan, T 2017, 'Multi-dimensional studies of synthetic genetic promoters enabled by microfluidic impact printing', Lab on a Chip, vol. 17, no. 13, pp. 2198-2207. https://doi.org/10.1039/c7lc00382j
Fan, Jinzhen ; Villarreal, Fernando ; Weyers, Brent ; Ding, Yunfeng ; Tseng, Kuo Hao ; Li, Jiannan ; Li, Baoqing ; Tan, Cheemeng ; Pan, Tingrui. / Multi-dimensional studies of synthetic genetic promoters enabled by microfluidic impact printing. In: Lab on a Chip. 2017 ; Vol. 17, No. 13. pp. 2198-2207.
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