Minimum reporting standards for plant biology context information in metabolomic studies

Oliver Fiehn, Lloyd W. Sumner, Seung Y. Rhee, Jane Ward, Julie Dickerson, Bernd Markus Lange, Geoff Lane, Ute Roessner, Robert Last, Basil Nikolau

Research output: Contribution to journalArticle

73 Citations (Scopus)

Abstract

Plant metabolomics has matured over the past 8 years. Plant biologists routinely use comprehensive analyses of plant metabolites to discover new responses to genetic or environmental perturbation, or to validate initial hypotheses on the function and in vivo action of gene products. The wealth of scientific findings has increasingly provoked interest to share and review raw or processed data from plant metabolomics reports. We here suggest a minimum of parameters to be reported in order to define details of experimental study designs in plant metabolomics studies.

Original languageEnglish (US)
Pages (from-to)195-201
Number of pages7
JournalMetabolomics
Volume3
Issue number3
DOIs
StatePublished - Sep 2007

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Metabolomics
Metabolites
Genes
Research Design

Keywords

  • Metabolite profiling
  • Metabonomics
  • Metadata
  • Minimum information
  • Ontology
  • Semantics

ASJC Scopus subject areas

  • Biochemistry
  • Cell Biology

Cite this

Fiehn, O., Sumner, L. W., Rhee, S. Y., Ward, J., Dickerson, J., Lange, B. M., ... Nikolau, B. (2007). Minimum reporting standards for plant biology context information in metabolomic studies. Metabolomics, 3(3), 195-201. https://doi.org/10.1007/s11306-007-0068-0

Minimum reporting standards for plant biology context information in metabolomic studies. / Fiehn, Oliver; Sumner, Lloyd W.; Rhee, Seung Y.; Ward, Jane; Dickerson, Julie; Lange, Bernd Markus; Lane, Geoff; Roessner, Ute; Last, Robert; Nikolau, Basil.

In: Metabolomics, Vol. 3, No. 3, 09.2007, p. 195-201.

Research output: Contribution to journalArticle

Fiehn, O, Sumner, LW, Rhee, SY, Ward, J, Dickerson, J, Lange, BM, Lane, G, Roessner, U, Last, R & Nikolau, B 2007, 'Minimum reporting standards for plant biology context information in metabolomic studies', Metabolomics, vol. 3, no. 3, pp. 195-201. https://doi.org/10.1007/s11306-007-0068-0
Fiehn, Oliver ; Sumner, Lloyd W. ; Rhee, Seung Y. ; Ward, Jane ; Dickerson, Julie ; Lange, Bernd Markus ; Lane, Geoff ; Roessner, Ute ; Last, Robert ; Nikolau, Basil. / Minimum reporting standards for plant biology context information in metabolomic studies. In: Metabolomics. 2007 ; Vol. 3, No. 3. pp. 195-201.
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