Metabox

A toolbox for metabolomic data analysis, interpretation and integrative exploration

Kwanjeera Wanichthanarak, Sili Fan, Dmitry Grapov, Dinesh Kumar Barupal, Oliver Fiehn

Research output: Contribution to journalArticle

35 Citations (Scopus)

Abstract

Similar to genomic and proteomic platforms, metabolomic data acquisition and analysis is becoming a routine approach for investigating biological systems. However, computational approaches for metabolomic data analysis and integration are still maturing. Metabox is a bioinformatics toolbox for deep phenotyping analytics that combines data processing, statistical analysis, functional analysis and integrative exploration of metabolomic data within proteomic and transcriptomic contexts. With the number of options provided in each analysis module, it also supports data analysis of other 'omic' families. The toolbox is an R-based web application, and it is freely available at http://kwanjeeraw.github.io/metabox/under the GPL-3 license.

Original languageEnglish (US)
Article numbere0171046
JournalPLoS One
Volume12
Issue number1
DOIs
StatePublished - Jan 1 2017

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Metabolomics
metabolomics
data analysis
Proteomics
proteomics
Statistical Data Interpretation
Licensure
Computational Biology
transcriptomics
bioinformatics
Functional analysis
Data integration
Biological systems
statistical analysis
Bioinformatics
genomics
phenotype
Data acquisition
Statistical methods

ASJC Scopus subject areas

  • Medicine(all)
  • Biochemistry, Genetics and Molecular Biology(all)
  • Agricultural and Biological Sciences(all)

Cite this

Wanichthanarak, K., Fan, S., Grapov, D., Barupal, D. K., & Fiehn, O. (2017). Metabox: A toolbox for metabolomic data analysis, interpretation and integrative exploration. PLoS One, 12(1), [e0171046]. https://doi.org/10.1371/journal.pone.0171046

Metabox : A toolbox for metabolomic data analysis, interpretation and integrative exploration. / Wanichthanarak, Kwanjeera; Fan, Sili; Grapov, Dmitry; Barupal, Dinesh Kumar; Fiehn, Oliver.

In: PLoS One, Vol. 12, No. 1, e0171046, 01.01.2017.

Research output: Contribution to journalArticle

Wanichthanarak, K, Fan, S, Grapov, D, Barupal, DK & Fiehn, O 2017, 'Metabox: A toolbox for metabolomic data analysis, interpretation and integrative exploration', PLoS One, vol. 12, no. 1, e0171046. https://doi.org/10.1371/journal.pone.0171046
Wanichthanarak, Kwanjeera ; Fan, Sili ; Grapov, Dmitry ; Barupal, Dinesh Kumar ; Fiehn, Oliver. / Metabox : A toolbox for metabolomic data analysis, interpretation and integrative exploration. In: PLoS One. 2017 ; Vol. 12, No. 1.
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