TY - JOUR
T1 - Informatics for improved algal taxonomic classification and research
T2 - A case study of UTEX 2341
AU - Higgins, Brendan T.
AU - Nobles, David
AU - Ma, Yan
AU - Wikoff, William
AU - Kind, Tobias
AU - Fiehn, Oliver
AU - Brand, Jerry
AU - VanderGheynst, Jean S.
PY - 2015/11/1
Y1 - 2015/11/1
N2 - Algal research has the potential to address numerous industrial and environmental challenges. Despite this potential, informatics data for algae are relatively modest limiting the development of algal biotechnology. This study reports on the re-classification of the green algae strain UTEX 2341 as a case study demonstrating the need for improved public informatics data for algae. Observations in the literature from lipid and pigment research led to uncertainty surrounding the identity of UTEX 2341, originally classified as Chlorella minutissima. In this study, lipid and conserved-gene sequencing data were combined to establish the identity of UTEX 2341 as Auxenochlorella protothecoides. Unambiguous identification of strains that are maintained over long periods of time will require sufficient allocation of resources to culture collections. Furthermore, development of repositories for biochemical and physiological data, along with DNA sequence information, are needed to facilitate sharing of strain data between research institutions and culture collections.
AB - Algal research has the potential to address numerous industrial and environmental challenges. Despite this potential, informatics data for algae are relatively modest limiting the development of algal biotechnology. This study reports on the re-classification of the green algae strain UTEX 2341 as a case study demonstrating the need for improved public informatics data for algae. Observations in the literature from lipid and pigment research led to uncertainty surrounding the identity of UTEX 2341, originally classified as Chlorella minutissima. In this study, lipid and conserved-gene sequencing data were combined to establish the identity of UTEX 2341 as Auxenochlorella protothecoides. Unambiguous identification of strains that are maintained over long periods of time will require sufficient allocation of resources to culture collections. Furthermore, development of repositories for biochemical and physiological data, along with DNA sequence information, are needed to facilitate sharing of strain data between research institutions and culture collections.
KW - Auxenochlorella protothecoides
KW - Chlorella minutissima
KW - UTEX 2341
UR - http://www.scopus.com/inward/record.url?scp=84947943669&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84947943669&partnerID=8YFLogxK
U2 - 10.1016/j.algal.2015.10.016
DO - 10.1016/j.algal.2015.10.016
M3 - Article
AN - SCOPUS:84947943669
VL - 12
SP - 545
EP - 549
JO - Algal Research
JF - Algal Research
SN - 2211-9264
ER -