Find Research Outputs

2018

Evaluation of water quality during successive severe drought years within Microcystis blooms using fish embryo toxicity tests for the San Francisco Estuary, California

Kurobe, T., Lehman, P. W., Haque, M. E., Sedda, T., Lesmeister, S. & Teh, S. Jan 1 2018 In : Science of the Total Environment. 610-611, p. 1029-1037 9 p.

Research output: Contribution to journalArticle

embryo
algal bloom
mortality
Erythrasma
drought

Light-activated antimicrobial activity of turmeric residue edible coatings against cross-contamination of Listeria innocua on sausages

Tosati, J. V., de Oliveira, E. F., Oliveira, J. V., Nitin, N. & Monteiro, A. R. Feb 1 2018 In : Food Control. 84, p. 177-185 9 p.

Research output: Contribution to journalArticle

Curcuma
Listeria
Hydrogels
coatings
hydrocolloids
2017

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

Mukherjee, S. , Seshadri, R. , Varghese, N. J. , Eloe-Fadrosh, E. A. , Meier-Kolthoff, J. P. , Göker, M. , Coates, R. C. , Hadjithomas, M. , Pavlopoulos, G. A. , Paez-Espino, D. , Yoshikuni, Y. , Visel, A. , Whitman, W. B. , Garrity, G. M. , Eisen, J. A. , Hugenholtz, P. , Pati, A. , Ivanova, N. N. , Woyke, T. , Klenk, H. P. & 1 others Kyrpides, N. C. Jul 1 2017 In : Nature Biotechnology. 35, 7, p. 676-683 8 p.

Research output: Contribution to journalArticle

Archaeal Genome
Bacterial Genomes
Genome
Genes
Cyclic AMP Receptor Protein

100K pathogen genome project

Weimer, B. C. 2017 In : Genome Announcements. 5, 28, e00594-17

Research output: Contribution to journalArticle

Genome
Bacterial Genomes
Public Health
2 Citations

100K Pathogen Genome Project: 306 Listeria draft genome sequences for food safety and public health

Chen, P., Kong, N., Huang, B., Thao, K., Ng, W., Storey, D. B., Arabyan, N., Foutouhi, A., Foutouhi, S. & Weimer, B. C. 2017 In : Genome Announcements. 5, 6, e00967-16

Research output: Contribution to journalArticle

Listeria
Food Safety
Listeria monocytogenes
Public Health
Genome

18F-sodium fluoride positron emission tomography of the equine distal limb: Exploratory study in three horses

Spriet, M., Espinosa, P., Kyme, A. Z., Phillips, K. L., Katzman, S. A., Galuppo, L. D., Stepanov, P. & Beylin, D. 2017 In : Equine Veterinary Journal.

Research output: Contribution to journalArticle

Sodium Fluoride
Positron-Emission Tomography
Horses
Extremities
horses

2017 American College of Rheumatology Guideline for the Prevention and Treatment of Glucocorticoid-Induced Osteoporosis

Buckley, L. , Guyatt, G. , Fink, H. A. , Cannon, M. , Grossman, J. , Hansen, K. E. , Humphrey, M. B. , Lane, N. E. , Magrey, M. , Miller, M. , Morrison, L. , Rao, M. , Robinson, A. B. , Saha, S. , Wolver, S. , Bannuru, R. R. , Vaysbrot, E. , Osani, M. , Turgunbaev, M. , Miller, A. S. & 1 others McAlindon, T. Aug 1 2017 In : Arthritis and Rheumatology. 69, 8, p. 1521-1537 17 p.

Research output: Contribution to journalArticle

Glucocorticoids
Osteoporosis
Diphosphonates
Vitamin D
Calcium

2017 American College of Rheumatology Guideline for the Prevention and Treatment of Glucocorticoid-Induced Osteoporosis

Buckley, L. , Guyatt, G. , Fink, H. A. , Cannon, M. , Grossman, J. , Hansen, K. E. , Humphrey, M. B. , Lane, N. E. , Magrey, M. , Miller, M. , Morrison, L. , Rao, M. , Byun Robinson, A. , Saha, S. , Wolver, S. , Bannuru, R. R. , Vaysbrot, E. , Osani, M. , Turgunbaev, M. , Miller, A. S. & 1 others McAlindon, T. Aug 1 2017 In : Arthritis Care and Research. 69, 8, p. 1095-1110 16 p.

Research output: Contribution to journalArticle

Glucocorticoids
Osteoporosis
Diphosphonates
Vitamin D
Calcium

3D Printing: current use in facial plastic and reconstructive surgery

Hsieh, T. Y., Dedhia, R., Cervenka, B. & Tollefson, T. T. Jul 20 2017 In : Current Opinion in Otolaryngology and Head and Neck Surgery.

Research output: Contribution to journalArticle

Plastic Surgery
Three Dimensional Printing
Technology
Biomedical Research
Costs and Cost Analysis
1 Citations

Abdominal adhesions: A practical review of an often overlooked entity

Tabibian, N., Swehli, E., Boyd, A., Umbreen, A. & Tabibian, J. H. Mar 1 2017 In : Annals of Medicine and Surgery. 15, p. 9-13 5 p.

Research output: Contribution to journalReview article

Adhesives
Nausea
Abdominal Pain
Differential Diagnoses
Radiation

Ability of clinicopathologic variables and clinical examination findings to predict race elimination in endurance horses

Fielding, C. L., Meier, C. A., Fellers, G. K. & Magdesian, K. G. Jan 1 2017 In : American Journal of Veterinary Research. 78, 1, p. 50-56 7 p.

Research output: Contribution to journalArticle

horses
Horses
blood
clinical examination
Heart Rate

Abnormal trajectories in cerebellum and brainstem volumes in carriers of the fragile X premutation

Wang, J. Y., Hessl, D., Hagerman, R. J., Simon, T. J., Tassone, F., Ferrer, E. & Rivera, S. M. Jul 1 2017 In : Neurobiology of Aging. 55, p. 11-19 9 p.

Research output: Contribution to journalArticle

Cerebellum
Brain Stem
Tremor
Ataxia
Brain

Abscisic acid induces a transient shift in signaling that enhances NF-κB-mediated parasite killing in the midgut of Anopheles stephensi without reducing lifespan or fecundity

Glennon, E. K. K., Torrevillas, B. K., Morrissey, S. F., Ejercito, J. M. & Luckhart, S. Jul 13 2017 In : Parasites and Vectors. 10, 1, 333

Research output: Contribution to journalArticle

Abscisic Acid
Anopheles
Fertility
Parasites
Culicidae
1 Citations

Absolute quantitation of human milk oligosaccharides reveals phenotypic variations during lactation

Xu, G., Davis, J. C. C., Goonatilleke, E., Smilowitz, J. T., German, J. B. & Lebrilla, C. B. 2017 In : Journal of Nutrition. 147, 1, p. 117-124 8 p.

Research output: Contribution to journalArticle

Human Milk
Oligosaccharides
Lactation
Milk
Malawi

Access to emergency contraception after removal of age restrictions

Wilkinson, T. A., Clark, P., Rafi, S., Carroll, A. E. & Miller, E. Jul 1 2017 In : Pediatrics. 140, 1, e20164262

Research output: Contribution to journalArticle

Postcoital Contraception
Pharmacies
Odds Ratio
Confidence Intervals
Levonorgestrel
Acculturation
Health Resources
Caregivers
Health
Hispanic Americans
Punctures
Needles
Appendicitis
Radiation
Pediatrics
Pubic Symphysis
Appendix

AC dielectrophoretic manipulation and electroporation of vaccinia virus using carbon nanoelectrode arrays

Madiyar, F. R., Haller, S. L., Farooq, O., Rothenburg, S., Culbertson, C. & Li, J. 2017 In : Electrophoresis.

Research output: Contribution to journalArticle

Electroporation
Vaccinia virus
Virion
Electrodes
Carbon

ACKR2: Nature's Decoy Receptor Lures Unsuspecting Chemokines in Psoriasis

Mabuchi, T. & Hwang, S. T. Jan 1 2017 In : Journal of Investigative Dermatology. 137, 1, p. 7-11 5 p.

Research output: Contribution to journalComment/debate

Chemokines
Psoriasis
Skin
Chemokine Receptors
Dermatitis

A Clinical Comparison of Anterior Cervical Plates Versus Stand-Alone Intervertebral Fusion Devices for Single-Level Anterior Cervical Discectomy and Fusion Procedures

Panchal, R. R., Kim, K. D., Eastlack, R., Lopez, J., Clavenna, A., Brooks, D. M. & Joshua, G. Mar 1 2017 In : World Neurosurgery. 99, p. 630-637 8 p.

Research output: Contribution to journalArticle

Diskectomy
Equipment and Supplies
Dysphonia
Deglutition Disorders
Length of Stay

A cluster-randomized trial of a middle school gender violence prevention program: Design, rationale, and sample characteristics

Abebe, K. Z., Jones, K. A., Ciaravino, S., Ripper, L., Paglisotti, T., Morrow, S. E., Grafals, M., Van Dusen, C. & Miller, E. Nov 1 2017 In : Contemporary Clinical Trials. 62, p. 11-20 10 p.

Research output: Contribution to journalArticle

Violence
Athletes
Sex Offenses
Sports
Students

A cluster-randomized trial to reduce caesarean delivery rates in Quebec: Cost-effectiveness analysis

Johri, M., Ng, E. S. W., Bermudez-Tamayo, C., Hoch, J. S., Ducruet, T. & Chaillet, N. May 22 2017 In : BMC Medicine. 15, 1, 96

Research output: Contribution to journalArticle

Quebec
Cesarean Section
Cost-Benefit Analysis
Costs and Cost Analysis
Confidence Intervals
1 Citations

A comparison of existing global DNA methylation assays to low-coverage whole-genome bisulfite sequencing for epidemiological studies

Crary-Dooley, F. K., Tam, M. E., Dunaway, K. W., Hertz-Picciotto, I., Schmidt, R. J. & LaSalle, J. M. Mar 4 2017 In : Epigenetics. 12, 3, p. 206-214 9 p.

Research output: Contribution to journalArticle

DNA Methylation
Epidemiologic Studies
Genome
Methylation
Epidemiology
Androgens
Horses
Estrogens
Steroids
stallions

A comparison of tracheal scaffold strategies for pediatric transplantation in a rabbit model

Maughan, E. F., Butler, C. R., Crowley, C., Teoh, G. Z., Hondt, M. D., Hamilton, N. J., Hynds, R. E., Lange, P., Ansari, T., Urbani, L., Janes, S. M., Coppi, P. D., Birchall, M. A. & Elliott, M. J. 2017 In : Laryngoscope.

Research output: Contribution to journalArticle

Transplantation
Pediatrics
Rabbits
Transplants
Allografts
4 Citations

A comprehensive analysis and immunobiology of autoimmune neurological syndromes during the Zika virus outbreak in Cúcuta, Colombia

Anaya, J. M., Rodríguez, Y., Monsalve, D. M., Vega, D., Ojeda, E., González-Bravo, D., Rodríguez-Jiménez, M., Pinto-Díaz, C. A., Chaparro, P., Gunturiz, M. L., Ansari, A. A., Gershwin, M. E., Molano-González, N., Ramírez-Santana, C. & Acosta-Ampudia, Y. Feb 1 2017 In : Journal of Autoimmunity. 77, p. 123-138 16 p.

Research output: Contribution to journalArticle

Guillain-Barre Syndrome
Colombia
Disease Outbreaks
Viruses
Infection
2 Citations

A comprehensive evaluation for the treatment of lupus nephritis

Zampeli, E., Klinman, D. M., Gershwin, M. E. & Moutsopoulos, H. M. Mar 1 2017 In : Journal of Autoimmunity. 78, p. 1-10 10 p.

Research output: Contribution to journalReview article

Lupus Nephritis
Cyclophosphamide
Methylprednisolone
Azathioprine
Standard of Care
4 Citations

A Comprehensive Examination of Reading Heterogeneity in Students with High Functioning Autism: Distinct Reading Profiles and Their Relation to Autism Symptom Severity

McIntyre, N. S., Solari, E. J., Grimm, R. P., E. Lerro, L., E. Gonzales, J. & Mundy, P. C. Feb 3 2017 In : Journal of Autism and Developmental Disorders. p. 1-16 16 p.

Research output: Contribution to journalArticle

Autistic Disorder
Students
Pervasive Child Development Disorders
Appointments and Schedules
Psychology

A Consensus-Driven Agenda for Emergency Medicine Firearm Injury Prevention Research

Ranney, M. L. , Fletcher, J. , Alter, H. , Barsotti, C. , Bebarta, V. S. , Betz, M. E. , Carter, P. M. , Cerdá, M. , Cunningham, R. M. , Crane, P. , Fahimi, J. , Miller, M. J. , Rowhani-Rahbar, A. , Vogel, J. A. , Wintemute, G. J. , Waseem, M. , Shah, M. N. , Alter, H. , Barsotti, C. E. , Betz, M. . E. & 24 others Borke, J., Boudreaux, E. D., Brown, K., Carter, P. M., Cerdá, M., Frisby, B., Crane, P. W., Cunningham, R., Fahimi, J., Fleegler, E. W., Fletcher, J., Geyer, B., Liang, S. Y., Miller, M. J., O'Connor, R. E., Papachristos, A., Ranney, M. L., Rivara, F., Rowhani-Rahbar, A., Shah, M. N., Swanson, J. G., Vogel, J. A., Waseem, M. & Wintemute, G. Feb 1 2017 In : Annals of Emergency Medicine. 69, 2, p. 227-240 14 p.

Research output: Contribution to journalArticle

Emergency Medicine
Firearms
Wounds and Injuries
Violence
Attempted Suicide

A cost-utility analysis of risk model-guided versus physician’s choice antiemetic prophylaxis in patients receiving chemotherapy for early-stage breast cancer: a net benefit regression approach

Thavorn, K., Coyle, D., Hoch, J. S., Vandermeer, L., Mazzarello, S., Wang, Z., Dranitsaris, G., Fergusson, D. & Clemons, M. Mar 9 2017 In : Supportive Care in Cancer. p. 1-9 9 p.

Research output: Contribution to journalArticle

Antiemetics
Cost-Benefit Analysis
Breast Neoplasms
Physicians
Drug Therapy
Acrodermatitis
Pemphigus
Parenteral Nutrition
Zinc
Total Parenteral Nutrition

ACR Appropriateness Criteria® Suspected Physical Abuse—Child

Wootton-Gorges, S. L., Soares, B. P., Alazraki, A. L., Anupindi, S. A., Blount, J. P., Booth, T. N., Dempsey, M. E., Falcone, R. A., Hayes, L. L., Kulkarni, A. V., Partap, S., Rigsby, C. K., Ryan, M. E., Safdar, N. M., Trout, A. T., Widmann, R. F., Karmazyn, B. K., Palasis, S. & Expert Panel on Pediatric Imaging: May 1 2017 In : Journal of the American College of Radiology. 14, 5, p. S338-S349

Research output: Contribution to journalArticle

Child Abuse
Wounds and Injuries
Rib Fractures
Expert Testimony
Neurologic Manifestations

ACR Appropriateness Criteria® Urinary Tract Infection—Child

Karmazyn, B. K., Alazraki, A. L., Anupindi, S. A., Dempsey, M. E., Dillman, J. R., Dorfman, S. R., Garber, M. D., Moore, S. G., Peters, C. A., Rice, H. E., Rigsby, C. K., Safdar, N. M., Simoneaux, S. F., Trout, A. T., Westra, S. J., Wootton-Gorges, S. L., Coley, B. D. & Expert Panel on Pediatric Imaging: May 1 2017 In : Journal of the American College of Radiology. 14, 5, p. S362-S371

Research output: Contribution to journalArticle

Vesico-Ureteral Reflux
Urinary Tract Infections
Kidney
Cicatrix
Pyelonephritis

A Critical Evaluation of Liver Pathology in Humans with Danon Disease and Experimental Correlates in a Rat Model of LAMP-2 Deficiency

Wang, L., Wang, J., Cai, W., Shi, Y., Zhou, X., Guo, G., Guo, C., Huang, X., Han, Z., Zhang, S., Ma, S., Zhou, X., Fan, D., Eric Gershwin, M. & Han, Y. Jan 26 2017 In : Clinical Reviews in Allergy and Immunology. p. 1-12 12 p.

Research output: Contribution to journalArticle

Glycogen Storage Disease Type IIb
Lysosome-Associated Membrane Glycoproteins
Protein Deficiency
Pathology
Liver
3 Citations

Active targeting theranostic iron oxide nanoparticles for MRI and magnetic resonance-guided focused ultrasound ablation of lung cancer

Wang, Z., Qiao, R., Tang, N., Lu, Z., Wang, H., Zhang, Z., Xue, X., Huang, Z., Zhang, S., Zhang, G. & Li, Y. May 1 2017 In : Biomaterials. 127, p. 25-35 11 p.

Research output: Contribution to journalArticle

Nanoparticles
Oxides
Lung Neoplasms
Magnetic Resonance Spectroscopy
Iron

Acute care surgery: An evolving paradigm

Jurkovich, G. J., Davis, K. A., Burlew, C. C., Dente, C. J., Galante, J. M., Goodwin, J. S., Joseph, B., de Moya, M., Becher, R. D. & Pandit, V. Jul 1 2017 In : Current Problems in Surgery. 54, 7, p. 364-395 32 p.

Research output: Contribution to journalArticle

2 Citations

Acylcarnitines as markers of exercise-associated fuel partitioning, xenometabolism, and potential signals to muscle afferent neurons

Zhang, J., Light, A. R., Hoppel, C. L., Campbell, C., Chandler, C. J., Burnett, D. J., Souza, E. C., Casazza, G. A., Hughen, R. W., Keim, N. L., Newman, J. W., Hunter, G. R., Fernandez, J. R., Garvey, W. T., Harper, M. E., Fiehn, O. & Adams, S. H. Jan 1 2017 In : Experimental Physiology. 102, 1, p. 48-69 22 p.

Research output: Contribution to journalArticle

Afferent Neurons
Fatty Acids
Exercise
Muscles
Insulin Resistance

Additive genetic variation in resistance of Nile tilapia (Oreochromis niloticus) to Streptococcus iniae and S. agalactiae capsular type Ib: Is genetic resistance correlated?

Shoemaker, C. A., Lozano, C. A., LaFrentz, B. R., García, J. C., Soto, E., Xu, D. H., Beck, B. H. & Rye, M. Feb 1 2017 In : Aquaculture. 468, p. 193-198 6 p.

Research output: Contribution to journalArticle

Streptococcus iniae
Oreochromis niloticus
heritability
fish
assortative mating

A Defined Esophagectomy Perioperative Clinical Care Process Can Improve Outcomes and Costs

Cooke, D. T., Calhoun, R. F., Kuderer, V. & David, E. A. Jan 1 2017 In : The American surgeon. 83, 1, p. 103-111 9 p.

Research output: Contribution to journalArticle

Perioperative Care
Esophagectomy
Costs and Cost Analysis
Critical Pathways
Neoplasms

Adenosine Deaminases That Act on RNA (ADARs)

Wang, Y., Zheng, Y. & Beal, P. A. 2017 In : Enzymes.

Research output: Contribution to journalArticle

Adenosine Deaminase
RNA
Inosine
Enzymes
Supravalvular Aortic Stenosis
3 Citations

Adhesion-Dependent Wave Generation in Crawling Cells

Barnhart, E. L., Allard, J., Lou, S. S., Theriot, J. A. & Mogilner, A. Jan 9 2017 In : Current Biology. 27, 1, p. 27-38 12 p.

Research output: Contribution to journalArticle

Acetylcholine
actin
Actins
Feedback
adhesion

A diagnostic microdosing approach to investigate platinum sensitivity in non-small cell lung cancer

Wang, S. S., Zimmermann, M., Zhang, H., Lin, T. Y., Malfatti, M., Haack, K., Turteltaub, K. W., Cimino, G. D., de Vere White, R., Pan, C. X. & Henderson, P. T. Aug 1 2017 In : International Journal of Cancer. 141, 3, p. 604-613 10 p.

Research output: Contribution to journalArticle

Carboplatin
Platinum
Non-Small Cell Lung Carcinoma
Mass Spectrometry
Cell Line

Adiposity, post-diagnosis weight change, and risk of cardiovascular events among early-stage breast cancer survivors

Cespedes Feliciano, E. M., Kwan, M. L., Kushi, L. H., Weltzien, E. K., Castillo, A. L. & Caan, B. J. Apr 1 2017 In : Breast Cancer Research and Treatment. 162, 3, p. 549-557 9 p.

Research output: Contribution to journalArticle

Adiposity
Survivors
Cardiovascular Diseases
Breast Neoplasms
Waist Circumference

Adjunctive Corticosteroid Therapy in the Treatment of Coccidioidal Meningitis

Thompson, G. R., Blair, J. E., Wang, S., Bercovitch, R., Bolaris, M., Van Den Akker, D., Lopez, R., Heidari, A., Catanzaro, A., Cadena, J., Chin-Hong, P., Spellberg, B. & Johnson, R. Jul 15 2017 In : Clinical Infectious Diseases. 65, 2, p. 338-341 4 p.

Research output: Contribution to journalArticle

Meningitis
Adrenal Cortex Hormones
Cohort Studies
Retrospective Studies
Morbidity
1 Citations

Adjuvant External Radiation Impacts Outcome of Pelvis-limited Stage III Endometrial Carcinoma: A Multi-institutional Study

Albuquerque, K., Folkert, M., Mayadev, J., Christie, A., Liotta, M. R., Nagel, C., Sevak, P., Harkenrider, M. M., Lea, J. S., Hanna, R. K., Small, W. C., Miller, D. S., Xie, X. J., Potkul, R. K. & Elshaikh, M. A. Feb 20 2017 In : American Journal of Clinical Oncology: Cancer Clinical Trials.

Research output: Contribution to journalArticle

Endometrial Neoplasms
Pelvis
Radiation
Drug Therapy
Recurrence

Administration of Subcutaneous Injections

Sexson, K., Lindauer, A. & Harvath, T. A. 2017 In : American Journal of Nursing. 117, 5, p. S7-S10

Research output: Contribution to journalArticle

Subcutaneous Injections
Caregivers
Public Policy
Nurses
Focus Groups

Admixture mapping of pelvic organ prolapse in African Americans from the Women's Health Initiative Hormone Therapy trial

Giri, A., Hartmann, K. E., Aldrich, M. C., Ward, R. M., Wu, J. M., Park, A. J., Gr, M., Qi, L., Nassir, R., Wallace, R. B., O'Sullivan, M. J., North, K. E., Edwards, D. R. V. & Edwards, T. L. Jun 1 2017 In : PLoS ONE. 12, 6, e0178839

Research output: Contribution to journalArticle

Hypopharyngeal Neoplasms
Blood Flow Velocity
Pelvic Organ Prolapse
Women's Health
African Americans

Adolescent and young adult oncology patients: Disparities in access to specialized cancer centers

Alvarez, E., Keegan, T., Johnston, E. E., Haile, R., Sanders, L., Saynina, O. & Chamberlain, L. J. 2017 In : Cancer.

Research output: Contribution to journalArticle

Young Adult
Neoplasms
Odds Ratio
Confidence Intervals
Insurance