High Throughput Fingerprint Analysis of Large-Insert Clones

Marco A. Marra, Tamara A. Kucaba, Nicole L. Dietrich, Eric D. Green, Buddy Brownstein, Richard K. Wilson, Ken M. McDonald, LaDeana W. Hillier, John Douglas Mcpherson, Robert H. Waterston

Research output: Contribution to journalArticlepeer-review

324 Scopus citations


As part of the Human Genome Project, the Washington University Genome Sequencing Center has commenced systematic sequencing of human chromsome 7. To organize and supply the effort, we have undertaken the construction of sequence-ready physical maps for defined chromosomal intervals. Map construction is a serial process composed of three main activities. First, candidate STS-positive large-insert PAC and BAC clones are identified. Next, these candidate clones are subjected to fingerprint analysis. Finally, the fingerprint data are used to assemble sequence-ready maps. The fingerprinting method we have devised is key to the success of the overall approach. We present here the details of the method and show that the fingerprints are of sufficient quality to permit the construction of megabase-size contigs in defined regions of the human genome. We anticipate that the high throughput and precision characteristic of our fingerprinting method will make it of general utility.

Original languageEnglish (US)
Pages (from-to)1072-1084
Number of pages13
JournalGenome Research
Issue number11
StatePublished - Nov 1997
Externally publishedYes

ASJC Scopus subject areas

  • Genetics


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