High-quality-draft genome sequence of the yellow-pigmented flavobacterium joostella marina type strain (En5T)

Erko Stackebrandt, Olga Chertkov, Alla Lapidus, Matt Nolan, Susan Lucas, Cliff Han, Jan Fang Cheng, Roxanne Tapia, Lynne A. Goodwin, David Bruce, Sam Pitluck, Konstantinos Liolios, Konstantinos Mavromatis, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Marcel Huntemann, Amrita Pati, Amy Chen, Krishna PalaniappanManfred Rohde, Brian J. Tindall, Markus Göker, Tanja Woyke, John C. Detter, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Hans Peter Klenk, Nikos C. Kyrpides

Research output: Contribution to journalArticle

4 Citations (Scopus)

Abstract

At present, Joostella marina Quan et al. 2008 is the sole species with a validly published name in the genus Joostella, family Flavobacteriacae, phylum Bacteriodetes. It is a yellow-pigmented, aerobic, marine organism about which little has been reported other than the chemotaxonomic features required for initial taxonomic description. The genome of J. marina strain En5T complements a list of 16 Flavobacteriaceae strains for which complete genomes and draft genomes are currently available. Here we describe the features of this bacterium, together with the complete genome sequence, and annotation. This is the first member of the genus Joostella for which a complete genome sequence becomes available. The 4,508,243 bp long single replicon genome with its 3,944 protein-coding and 60 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)37-46
Number of pages10
JournalStandards in Genomic Sciences
Volume8
Issue number1
DOIs
StatePublished - 2013

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Flavobacterium
Genome
Flavobacteriaceae
Encyclopedias
Bacteria
Aquatic Organisms
Replicon
Archaea
Names
RNA
Genes
Proteins

Keywords

  • Aerobic
  • Bacteroidetes
  • Flavobacteriaceae
  • Geba
  • Gram-negative
  • Mesophile
  • Non-motile

ASJC Scopus subject areas

  • Genetics

Cite this

Stackebrandt, E., Chertkov, O., Lapidus, A., Nolan, M., Lucas, S., Han, C., ... Kyrpides, N. C. (2013). High-quality-draft genome sequence of the yellow-pigmented flavobacterium joostella marina type strain (En5T). Standards in Genomic Sciences, 8(1), 37-46. https://doi.org/10.4056/sigs.3537045

High-quality-draft genome sequence of the yellow-pigmented flavobacterium joostella marina type strain (En5T). / Stackebrandt, Erko; Chertkov, Olga; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Han, Cliff; Cheng, Jan Fang; Tapia, Roxanne; Goodwin, Lynne A.; Bruce, David; Pitluck, Sam; Liolios, Konstantinos; Mavromatis, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Huntemann, Marcel; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Rohde, Manfred; Tindall, Brian J.; Göker, Markus; Woyke, Tanja; Detter, John C.; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Klenk, Hans Peter; Kyrpides, Nikos C.

In: Standards in Genomic Sciences, Vol. 8, No. 1, 2013, p. 37-46.

Research output: Contribution to journalArticle

Stackebrandt, E, Chertkov, O, Lapidus, A, Nolan, M, Lucas, S, Han, C, Cheng, JF, Tapia, R, Goodwin, LA, Bruce, D, Pitluck, S, Liolios, K, Mavromatis, K, Pagani, I, Ivanova, N, Mikhailova, N, Huntemann, M, Pati, A, Chen, A, Palaniappan, K, Rohde, M, Tindall, BJ, Göker, M, Woyke, T, Detter, JC, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Klenk, HP & Kyrpides, NC 2013, 'High-quality-draft genome sequence of the yellow-pigmented flavobacterium joostella marina type strain (En5T)', Standards in Genomic Sciences, vol. 8, no. 1, pp. 37-46. https://doi.org/10.4056/sigs.3537045
Stackebrandt, Erko ; Chertkov, Olga ; Lapidus, Alla ; Nolan, Matt ; Lucas, Susan ; Han, Cliff ; Cheng, Jan Fang ; Tapia, Roxanne ; Goodwin, Lynne A. ; Bruce, David ; Pitluck, Sam ; Liolios, Konstantinos ; Mavromatis, Konstantinos ; Pagani, Ioanna ; Ivanova, Natalia ; Mikhailova, Natalia ; Huntemann, Marcel ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Rohde, Manfred ; Tindall, Brian J. ; Göker, Markus ; Woyke, Tanja ; Detter, John C. ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Klenk, Hans Peter ; Kyrpides, Nikos C. / High-quality-draft genome sequence of the yellow-pigmented flavobacterium joostella marina type strain (En5T). In: Standards in Genomic Sciences. 2013 ; Vol. 8, No. 1. pp. 37-46.
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