Glyco-centric lectin magnetic bead array (LeMBA) - proteomics dataset of human serum samples from healthy, Barrett's esophagus and esophageal adenocarcinoma individuals

Alok K. Shah, Kim Anh Lê Cao, Eun ju Choi, David Chen, Benoît Gautier, Derek Nancarrow, David C. Whiteman, Peter R. Baker, Karl R. Clauser, Robert J. Chalkley, Nicholas A. Saunders, Andrew P. Barbour, Virendra Joshi, Michelle M. Hill

Research output: Contribution to journalArticle

3 Scopus citations

Abstract

This data article describes serum glycoprotein biomarker discovery and qualification datasets generated using lectin magnetic bead array (LeMBA) - mass spectrometry techniques, "Serum glycoprotein biomarker discovery and qualification pipeline reveals novel diagnostic biomarker candidates for esophageal adenocarcinoma" [1]. Serum samples collected from healthy, metaplastic Barrett's esophagus (BE) and esophageal adenocarcinoma (EAC) individuals were profiled for glycoprotein subsets via differential lectin binding. The biomarker discovery proteomics dataset consisting of 20 individual lectin pull-downs for 29 serum samples with a spiked-in internal standard chicken ovalbumin protein has been deposited in the PRIDE partner repository of the ProteomeXchange Consortium with the data set identifier PRIDE: PXD002442. Annotated MS/MS spectra for the peptide identifications can be viewed using MS-Viewer (〈 http://prospector2.ucsf.edu/prospector/cgi-bin/msform.cgi?form=msviewer〉) using search key "jn7qafftux". The qualification dataset contained 6-lectin pulldown-coupled multiple reaction monitoring-mass spectrometry (MRM-MS) data for 41 protein candidates, from 60 serum samples. This dataset is available as a supplemental files with the original publication [1].

Original languageEnglish (US)
Pages (from-to)1058-1062
Number of pages5
JournalData in Brief
Volume7
DOIs
StatePublished - Jun 1 2016
Externally publishedYes

Keywords

  • Barrett's esophagus
  • Biomarker
  • Esophageal adenocarcinoma
  • Glycoprotein
  • Proteomics

ASJC Scopus subject areas

  • General

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  • Cite this

    Shah, A. K., Lê Cao, K. A., Choi, E. J., Chen, D., Gautier, B., Nancarrow, D., Whiteman, D. C., Baker, P. R., Clauser, K. R., Chalkley, R. J., Saunders, N. A., Barbour, A. P., Joshi, V., & Hill, M. M. (2016). Glyco-centric lectin magnetic bead array (LeMBA) - proteomics dataset of human serum samples from healthy, Barrett's esophagus and esophageal adenocarcinoma individuals. Data in Brief, 7, 1058-1062. https://doi.org/10.1016/j.dib.2016.03.081