Genotyping of Bacteroides fragilis isolates from stool specimens by arbitrarily-primed-PCR

Praveena N. Sarma, Yajarayma J. Tang, Thomas P Prindiville, Paul D. Osborne, Spencer Jang, Joseph Silva, Stuart H Cohen

Research output: Contribution to journalArticle

9 Citations (Scopus)

Abstract

In order to determine genetic relatedness of Bacteroides fragilis isolates from different clinical sources, arbitrarily primed polymerase chain reaction (PCR) (AP-PCR) was used to compare 17 strains isolated from patients with inflammatory bowel disease (IBD) and 20 strains isolated from foals with diarrhea. Three reference ATCC strains were also analyzed. Eighteen unique types were identified with a 22-mer arbitrary primer (ERIC-2) among the 20 patient isolates. Types 1 (enterotoxigenic) and 9 (nonenterotoxigenic), were each found in the stools of two patients. All other isolates showed a distinct and unique DNA banding pattern indicating a high degree of genotypic variability. Eleven types were identified among the foal isolates. Type 20, a nonenterotoxigenic type, was present in 30% of the foals. No correlation was found between the human and horse isolates. No clear relationship between a disease state (diarrhea or IBD) and specific types was observed. AP-PCR will be useful as a rapid method to determine genetic relatedness and in future epidemiologic studies of diarrheal diseases due to B. fragilis. (C) 2000 Elsevier Science Inc.

Original languageEnglish (US)
Pages (from-to)225-229
Number of pages5
JournalDiagnostic Microbiology and Infectious Disease
Volume37
Issue number4
DOIs
StatePublished - Aug 2000

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Bacteroides fragilis
Polymerase Chain Reaction
Diarrhea
Inflammatory Bowel Diseases
Horses
Epidemiologic Studies
DNA

ASJC Scopus subject areas

  • Infectious Diseases
  • Immunology and Allergy
  • Virology
  • Parasitology
  • Microbiology
  • Immunology
  • Applied Microbiology and Biotechnology

Cite this

Genotyping of Bacteroides fragilis isolates from stool specimens by arbitrarily-primed-PCR. / Sarma, Praveena N.; Tang, Yajarayma J.; Prindiville, Thomas P; Osborne, Paul D.; Jang, Spencer; Silva, Joseph; Cohen, Stuart H.

In: Diagnostic Microbiology and Infectious Disease, Vol. 37, No. 4, 08.2000, p. 225-229.

Research output: Contribution to journalArticle

Sarma, Praveena N. ; Tang, Yajarayma J. ; Prindiville, Thomas P ; Osborne, Paul D. ; Jang, Spencer ; Silva, Joseph ; Cohen, Stuart H. / Genotyping of Bacteroides fragilis isolates from stool specimens by arbitrarily-primed-PCR. In: Diagnostic Microbiology and Infectious Disease. 2000 ; Vol. 37, No. 4. pp. 225-229.
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