Genomic functions of developmental pluripotency associated factor 4 (Dppa4) in pluripotent stem cells and cancer

Rachel Herndon Klein, Po Yuan Tung, Priyanka Somanath, Hans Joerg Fehling, Paul S Knoepfler

Research output: Contribution to journalArticle

1 Citation (Scopus)

Abstract

Developmental pluripotency associated factor 4 (Dppa4) is a highly specific marker of pluripotent cells, and is also overexpressed in certain cancers, but its function in either of these contexts is poorly understood. In this study, we use ChIP-Seq to identify Dppa4 binding genome-wide in three distinct cell types: mouse embryonic stem cells (mESC), embryonal carcinoma cells, and 3T3 fibroblasts ectopically expressing Dppa4. We find a core set of Dppa4 binding sites shared across cell types, and also a substantial number of sites unique to each cell type. Across cell types Dppa4 shows a preference for binding to regions with active chromatin signatures, and can influence chromatin modifications at target genes. In 3T3 fibroblasts with enforced Dppa4 expression, Dppa4 represses the cell cycle inhibitor Cdkn2c and activates Ets family transcription factor Etv4, leading to alterations in the cell cycle that likely contribute to the oncogenic phenotype. Dppa4 also directly regulates Etv4 in mESC but represses it in this context, and binds with Oct4 to a set of shared targets that are largely independent of Sox2 and Nanog, indicating that Dppa4 functions independently of the core pluripotency network in stem cells. Together these data provide novel insights into Dppa4 function in both pluripotent and oncogenic contexts.

Original languageEnglish (US)
Pages (from-to)83-94
Number of pages12
JournalStem Cell Research
Volume31
DOIs
StatePublished - Aug 1 2018

Fingerprint

Pluripotent Stem Cells
Neoplasms
Chromatin
Cell Cycle
Fibroblasts
Proto-Oncogene Proteins c-ets
Embryonal Carcinoma Stem Cells
Stem Cells
Binding Sites
Genome
Phenotype
Genes

Keywords

  • Cell cycle
  • Chromatin
  • Dppa4
  • Histone deacetylase
  • Oct4
  • Oncogene
  • Pluripotent stem cells

ASJC Scopus subject areas

  • Developmental Biology
  • Cell Biology

Cite this

Genomic functions of developmental pluripotency associated factor 4 (Dppa4) in pluripotent stem cells and cancer. / Klein, Rachel Herndon; Tung, Po Yuan; Somanath, Priyanka; Fehling, Hans Joerg; Knoepfler, Paul S.

In: Stem Cell Research, Vol. 31, 01.08.2018, p. 83-94.

Research output: Contribution to journalArticle

Klein, Rachel Herndon ; Tung, Po Yuan ; Somanath, Priyanka ; Fehling, Hans Joerg ; Knoepfler, Paul S. / Genomic functions of developmental pluripotency associated factor 4 (Dppa4) in pluripotent stem cells and cancer. In: Stem Cell Research. 2018 ; Vol. 31. pp. 83-94.
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