Genomic characterization of equine Interleukin-4 receptor α-chain (IL4R)

O. D. Solberg, K. A. Jackson, L. V. Millon, Jeffrey L Stott, M. L. Vandenplas, J. N. Moore, Johanna L Watson

Research output: Contribution to journalArticle

10 Citations (Scopus)

Abstract

Three overlapping fragments of the equine interleukin-4 receptor alpha chain gene (IL4R) were cloned and sequenced. The resulting 3553bp cDNA sequence exhibited homology to human, murine and bovine IL4R. The equine IL4R exhibits many conserved features when compared to other species, including intron-exon boundary positions and amino acid sequence motifs characteristic of type I cytokine receptors. The IL4R gene was localized to horse chromosome ECA13 by synteny mapping on a somatic cell hybrid panel. Evidence for an alternative splice variant of IL4R was found in the genomic sequence and subsequently verified using RT-PCR on equine monocyte RNA. A polymorphism screen of the largest exon, homologous to exon 12 of the human IL4R gene, was performed using DNA from 60 horses of various breeds which yielded 11 coding-region single nucleotide polymorphisms (SNPs), 7 synonymous and 4 non-synonymous. Three of the four non-synonymous SNPs occur at high frequencies and are found very near a conserved tyrosine residue.

Original languageEnglish (US)
Pages (from-to)187-194
Number of pages8
JournalVeterinary Immunology and Immunopathology
Volume97
Issue number3-4
DOIs
StatePublished - Feb 2004

Fingerprint

Interleukin-4 Receptors
interleukin-4
Horses
genomics
horses
receptors
Exons
exons
Single Nucleotide Polymorphism
Interleukin-4 Receptor alpha Subunit
Genes
Synteny
single nucleotide polymorphism
Amino Acid Motifs
Cytokine Receptors
Hybrid Cells
Sequence Homology
Introns
Tyrosine
horse breeds

Keywords

  • Alternative splicing
  • Horse
  • IL4R
  • Interleukin-4 receptor
  • Single-nucleotide polymorphism

ASJC Scopus subject areas

  • Animal Science and Zoology
  • Immunology
  • veterinary(all)

Cite this

Genomic characterization of equine Interleukin-4 receptor α-chain (IL4R). / Solberg, O. D.; Jackson, K. A.; Millon, L. V.; Stott, Jeffrey L; Vandenplas, M. L.; Moore, J. N.; Watson, Johanna L.

In: Veterinary Immunology and Immunopathology, Vol. 97, No. 3-4, 02.2004, p. 187-194.

Research output: Contribution to journalArticle

Solberg, O. D. ; Jackson, K. A. ; Millon, L. V. ; Stott, Jeffrey L ; Vandenplas, M. L. ; Moore, J. N. ; Watson, Johanna L. / Genomic characterization of equine Interleukin-4 receptor α-chain (IL4R). In: Veterinary Immunology and Immunopathology. 2004 ; Vol. 97, No. 3-4. pp. 187-194.
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