Genome-wide association and linkage analyses localize a progressive retinal atrophy locus in Persian cats

Hasan Alhaddad, Barbara Gandolfi, Robert A Grahn, Hyung Chul Rah, Carlyn B. Peterson, David J Maggs, Kathryn G Koehler, Niels C Pedersen, Leslie A Lyons

Research output: Contribution to journalArticle

11 Citations (Scopus)

Abstract

Hereditary eye diseases of animals serve as excellent models of human ocular disorders and assist in the development of gene and drug therapies for inherited forms of blindness. Several primary hereditary eye conditions affecting various ocular tissues and having different rates of progression have been documented in domestic cats. Gene therapy for canine retinopathies has been successful, thus the cat could be a gene therapy candidate for other forms of retinal degenerations. The current study investigates a hereditary, autosomal recessive, retinal degeneration specific to Persian cats. A multi-generational pedigree segregating for this progressive retinal atrophy was genotyped using a 63 K SNP array and analyzed via genome-wide linkage and association methods. A multi-point parametric linkage analysis localized the blindness phenotype to a ~1.75 Mb region with significant LOD scores (Z ≈ 14, θ = 0.00) on cat chromosome E1. Genome-wide TDT, sib-TDT, and case-control analyses also consistently supported significant association within the same region on chromosome E1, which is homologous to human chromosome 17. Using haplotype analysis, a ~1.3 Mb region was identified as highly associated for progressive retinal atrophy in Persian cats. Several candidate genes within the region are reasonable candidates as a potential causative gene and should be considered for molecular analyses.

Original languageEnglish (US)
Pages (from-to)354-362
Number of pages9
JournalMammalian Genome
Volume25
Issue number7-8
DOIs
StatePublished - 2014

Fingerprint

Genome-Wide Association Study
Atrophy
Cats
Genetic Therapy
Retinal Degeneration
Blindness
Hereditary Eye Diseases
Chromosomes
Genome
Chromosomes, Human, Pair 17
Human Chromosomes
Pedigree
Haplotypes
Genes
Single Nucleotide Polymorphism
Canidae
Phenotype
Drug Therapy

ASJC Scopus subject areas

  • Genetics
  • Medicine(all)

Cite this

Genome-wide association and linkage analyses localize a progressive retinal atrophy locus in Persian cats. / Alhaddad, Hasan; Gandolfi, Barbara; Grahn, Robert A; Rah, Hyung Chul; Peterson, Carlyn B.; Maggs, David J; Koehler, Kathryn G; Pedersen, Niels C; Lyons, Leslie A.

In: Mammalian Genome, Vol. 25, No. 7-8, 2014, p. 354-362.

Research output: Contribution to journalArticle

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