Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055T)

Marcel Huntemann, Erko Stackebrandt, Brittany Held, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan Fang Cheng, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam LandManfred Rohde, Sabine Gronow, Markus Göker, John C. Detter, James Bristow, Jonathan A Eisen, Victor Markowitz, Tanja Woyke, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Alla Lapidus

Research output: Contribution to journalArticle

3 Citations (Scopus)

Abstract

Leptonema illini Hovind-Hougen 1979 is the type species of the genus Leptonema, family Leptospiraceae, phylum Spirochaetes. Organisms of this family have a Gramnegativelike cell envelope consisting of a cytoplasmic membrane and an outer membrane. The peptidoglycan layer is associated with the cytoplasmic rather than the outer membrane. The two flagella of members of Leptospiraceae extend from the cytoplasmic membrane at the ends of the bacteria into the periplasmic space and are necessary for their motility. Here we describe the features of the L. illini type strain, together with the complete genome sequence, and annotation. This is the first genome sequence (finished at the level of Improved High Quality Draft) to be reported from of a member of the genus Leptonema and a representative of the third genus of the family Leptospiraceae for which complete or draft genome sequences are now available. The three scaffolds of the 4,522,760 bp draft genome sequence reported here, and its 4,230 proteincoding and 47 RNA genes are part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)177-187
Number of pages11
JournalStandards in Genomic Sciences
Volume8
Issue number2
DOIs
StatePublished - 2013

Fingerprint

Leptospiraceae
Spirochaetales
Genome
Cell Membrane
Encyclopedias
Bacteria
Periplasm
Membranes
Flagella
Peptidoglycan
Archaea
RNA
Genes

Keywords

  • Aerobic
  • Axial flagella
  • Chemoorganotrophic
  • Cytoplasmatic tubules
  • Flexible
  • GEBA
  • Gramnegative
  • Leptospiraceae
  • Motile
  • Nonsporulating

ASJC Scopus subject areas

  • Genetics

Cite this

Huntemann, M., Stackebrandt, E., Held, B., Nolan, M., Lucas, S., Hammon, N., ... Lapidus, A. (2013). Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055T). Standards in Genomic Sciences, 8(2), 177-187. https://doi.org/10.4056/sigs.3637201

Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055T). / Huntemann, Marcel; Stackebrandt, Erko; Held, Brittany; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan Fang; Tapia, Roxanne; Goodwin, Lynne A.; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Rohde, Manfred; Gronow, Sabine; Göker, Markus; Detter, John C.; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Woyke, Tanja; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Lapidus, Alla.

In: Standards in Genomic Sciences, Vol. 8, No. 2, 2013, p. 177-187.

Research output: Contribution to journalArticle

Huntemann, M, Stackebrandt, E, Held, B, Nolan, M, Lucas, S, Hammon, N, Deshpande, S, Cheng, JF, Tapia, R, Goodwin, LA, Pitluck, S, Liolios, K, Pagani, I, Ivanova, N, Mavromatis, K, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Rohde, M, Gronow, S, Göker, M, Detter, JC, Bristow, J, Eisen, JA, Markowitz, V, Woyke, T, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Lapidus, A 2013, 'Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055T)', Standards in Genomic Sciences, vol. 8, no. 2, pp. 177-187. https://doi.org/10.4056/sigs.3637201
Huntemann, Marcel ; Stackebrandt, Erko ; Held, Brittany ; Nolan, Matt ; Lucas, Susan ; Hammon, Nancy ; Deshpande, Shweta ; Cheng, Jan Fang ; Tapia, Roxanne ; Goodwin, Lynne A. ; Pitluck, Sam ; Liolios, Konstantinos ; Pagani, Ioanna ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Mikhailova, Natalia ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Rohde, Manfred ; Gronow, Sabine ; Göker, Markus ; Detter, John C. ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Woyke, Tanja ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Lapidus, Alla. / Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055T). In: Standards in Genomic Sciences. 2013 ; Vol. 8, No. 2. pp. 177-187.
@article{61c393a200e24090825e60e748f18703,
title = "Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055T)",
abstract = "Leptonema illini Hovind-Hougen 1979 is the type species of the genus Leptonema, family Leptospiraceae, phylum Spirochaetes. Organisms of this family have a Gramnegativelike cell envelope consisting of a cytoplasmic membrane and an outer membrane. The peptidoglycan layer is associated with the cytoplasmic rather than the outer membrane. The two flagella of members of Leptospiraceae extend from the cytoplasmic membrane at the ends of the bacteria into the periplasmic space and are necessary for their motility. Here we describe the features of the L. illini type strain, together with the complete genome sequence, and annotation. This is the first genome sequence (finished at the level of Improved High Quality Draft) to be reported from of a member of the genus Leptonema and a representative of the third genus of the family Leptospiraceae for which complete or draft genome sequences are now available. The three scaffolds of the 4,522,760 bp draft genome sequence reported here, and its 4,230 proteincoding and 47 RNA genes are part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Aerobic, Axial flagella, Chemoorganotrophic, Cytoplasmatic tubules, Flexible, GEBA, Gramnegative, Leptospiraceae, Motile, Nonsporulating",
author = "Marcel Huntemann and Erko Stackebrandt and Brittany Held and Matt Nolan and Susan Lucas and Nancy Hammon and Shweta Deshpande and Cheng, {Jan Fang} and Roxanne Tapia and Goodwin, {Lynne A.} and Sam Pitluck and Konstantinos Liolios and Ioanna Pagani and Natalia Ivanova and Konstantinos Mavromatis and Natalia Mikhailova and Amrita Pati and Amy Chen and Krishna Palaniappan and Miriam Land and Manfred Rohde and Sabine Gronow and Markus G{\"o}ker and Detter, {John C.} and James Bristow and Eisen, {Jonathan A} and Victor Markowitz and Tanja Woyke and Philip Hugenholtz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter} and Alla Lapidus",
year = "2013",
doi = "10.4056/sigs.3637201",
language = "English (US)",
volume = "8",
pages = "177--187",
journal = "Environmental Microbiomes",
issn = "1944-3277",
publisher = "BioMed Central Ltd.",
number = "2",

}

TY - JOUR

T1 - Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055T)

AU - Huntemann, Marcel

AU - Stackebrandt, Erko

AU - Held, Brittany

AU - Nolan, Matt

AU - Lucas, Susan

AU - Hammon, Nancy

AU - Deshpande, Shweta

AU - Cheng, Jan Fang

AU - Tapia, Roxanne

AU - Goodwin, Lynne A.

AU - Pitluck, Sam

AU - Liolios, Konstantinos

AU - Pagani, Ioanna

AU - Ivanova, Natalia

AU - Mavromatis, Konstantinos

AU - Mikhailova, Natalia

AU - Pati, Amrita

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Rohde, Manfred

AU - Gronow, Sabine

AU - Göker, Markus

AU - Detter, John C.

AU - Bristow, James

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Woyke, Tanja

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

AU - Lapidus, Alla

PY - 2013

Y1 - 2013

N2 - Leptonema illini Hovind-Hougen 1979 is the type species of the genus Leptonema, family Leptospiraceae, phylum Spirochaetes. Organisms of this family have a Gramnegativelike cell envelope consisting of a cytoplasmic membrane and an outer membrane. The peptidoglycan layer is associated with the cytoplasmic rather than the outer membrane. The two flagella of members of Leptospiraceae extend from the cytoplasmic membrane at the ends of the bacteria into the periplasmic space and are necessary for their motility. Here we describe the features of the L. illini type strain, together with the complete genome sequence, and annotation. This is the first genome sequence (finished at the level of Improved High Quality Draft) to be reported from of a member of the genus Leptonema and a representative of the third genus of the family Leptospiraceae for which complete or draft genome sequences are now available. The three scaffolds of the 4,522,760 bp draft genome sequence reported here, and its 4,230 proteincoding and 47 RNA genes are part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Leptonema illini Hovind-Hougen 1979 is the type species of the genus Leptonema, family Leptospiraceae, phylum Spirochaetes. Organisms of this family have a Gramnegativelike cell envelope consisting of a cytoplasmic membrane and an outer membrane. The peptidoglycan layer is associated with the cytoplasmic rather than the outer membrane. The two flagella of members of Leptospiraceae extend from the cytoplasmic membrane at the ends of the bacteria into the periplasmic space and are necessary for their motility. Here we describe the features of the L. illini type strain, together with the complete genome sequence, and annotation. This is the first genome sequence (finished at the level of Improved High Quality Draft) to be reported from of a member of the genus Leptonema and a representative of the third genus of the family Leptospiraceae for which complete or draft genome sequences are now available. The three scaffolds of the 4,522,760 bp draft genome sequence reported here, and its 4,230 proteincoding and 47 RNA genes are part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Aerobic

KW - Axial flagella

KW - Chemoorganotrophic

KW - Cytoplasmatic tubules

KW - Flexible

KW - GEBA

KW - Gramnegative

KW - Leptospiraceae

KW - Motile

KW - Nonsporulating

UR - http://www.scopus.com/inward/record.url?scp=84879345163&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=84879345163&partnerID=8YFLogxK

U2 - 10.4056/sigs.3637201

DO - 10.4056/sigs.3637201

M3 - Article

C2 - 23991250

AN - SCOPUS:84879345163

VL - 8

SP - 177

EP - 187

JO - Environmental Microbiomes

JF - Environmental Microbiomes

SN - 1944-3277

IS - 2

ER -