Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10t)

Alla Lapidus, Olga Chertkov, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Marcel Huntemann, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna PalaniappanMiriam Land, Loren Hauser, Evelyne Marie Brambilla, Manfred Rohde, Birte Abt, Stefan Spring, Markus Göker, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Tanja Woyke

Research output: Contribution to journalArticle

9 Citations (Scopus)

Abstract

Flexistipes sinusarabici Fiala et al. 2000 is the type species of the genus Flexistipes in the fami-ly Deferribacteraceae. The species is of interest because of its isolated phylogenetic location in a genomically under-characterized region of the tree of life, and because of its origin from a multiply extreme environment; the Atlantis Deep brines of the Red Sea, where it had to struggle with high temperatures, high salinity, and a high concentrations of heavy metals. This is the fourth completed genome sequence to be published of a type strain of the family Deferribacteraceae. The 2,526,590 bp long genome with its 2,346 protein-coding and 53 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)86-96
Number of pages11
JournalStandards in Genomic Sciences
Volume5
Issue number1
DOIs
StatePublished - 2011

Fingerprint

Genome
Encyclopedias
Indian Ocean
Archaea
Salinity
Heavy Metals
RNA
Bacteria
Temperature
Genes
Proteins
Extreme Environments

Keywords

  • Brine
  • Deferribacteraceae
  • Geba
  • Gram-negative
  • Heterotrophic
  • Marine
  • Moderately thermo-philic
  • Non-motile
  • Strictly anaerobic

ASJC Scopus subject areas

  • Genetics

Cite this

Lapidus, A., Chertkov, O., Nolan, M., Lucas, S., Hammon, N., Deshpande, S., ... Woyke, T. (2011). Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10t). Standards in Genomic Sciences, 5(1), 86-96. https://doi.org/10.4056/sigs.2235024

Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10t). / Lapidus, Alla; Chertkov, Olga; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan Fang; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Huntemann, Marcel; Mavromatis, Konstantinos; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Brambilla, Evelyne Marie; Rohde, Manfred; Abt, Birte; Spring, Stefan; Göker, Markus; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Woyke, Tanja.

In: Standards in Genomic Sciences, Vol. 5, No. 1, 2011, p. 86-96.

Research output: Contribution to journalArticle

Lapidus, A, Chertkov, O, Nolan, M, Lucas, S, Hammon, N, Deshpande, S, Cheng, JF, Tapia, R, Han, C, Goodwin, L, Pitluck, S, Liolios, K, Pagani, I, Ivanova, N, Huntemann, M, Mavromatis, K, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Brambilla, EM, Rohde, M, Abt, B, Spring, S, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Woyke, T 2011, 'Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10t)', Standards in Genomic Sciences, vol. 5, no. 1, pp. 86-96. https://doi.org/10.4056/sigs.2235024
Lapidus, Alla ; Chertkov, Olga ; Nolan, Matt ; Lucas, Susan ; Hammon, Nancy ; Deshpande, Shweta ; Cheng, Jan Fang ; Tapia, Roxanne ; Han, Cliff ; Goodwin, Lynne ; Pitluck, Sam ; Liolios, Konstantinos ; Pagani, Ioanna ; Ivanova, Natalia ; Huntemann, Marcel ; Mavromatis, Konstantinos ; Mikhailova, Natalia ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Brambilla, Evelyne Marie ; Rohde, Manfred ; Abt, Birte ; Spring, Stefan ; Göker, Markus ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Woyke, Tanja. / Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10t). In: Standards in Genomic Sciences. 2011 ; Vol. 5, No. 1. pp. 86-96.
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