Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314T)

Markus Göker, Elisabeth Saunders, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan Fang Cheng, Cliff Han, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Konstantinos Mavromatis, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna PalaniappanMiriam Land, Yun Juan Chang, Cynthia D. Jeffries, Evelyne Marie Brambilla, Manfred Rohde, Stefan Spring, John C. Detter, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk

Research output: Contribution to journalArticle

15 Citations (Scopus)

Abstract

Thermovirga lienii Dahle and Birkeland 2006 is a member of the genus Thermovirga in the genomically moderately well characterized phylum 'Synergistetes'. Members of this relatively recently proposed phylum 'Synergistetes' are of interest because of their isolated phylogenetic position and their diverse habitats, e.g. from humans to oil wells. The genome of T. lienii Cas60314T is the fifth genome sequence (third completed) from this phylum to be published. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1,999,646 bp long genome (including one plasmid) with its 1,914 pro-tein-coding and 59 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)230-239
Number of pages10
JournalStandards in Genomic Sciences
Volume6
Issue number2
DOIs
StatePublished - 2012

Fingerprint

Sulfur-Reducing Bacteria
Genome
Amino Acids
Encyclopedias
Oil and Gas Fields
Archaea
Ecosystem
Plasmids
RNA
Bacteria
Genes

Keywords

  • Anaerobic
  • Chemoorganotrophic
  • GEBA
  • Gram-negative
  • Marine oil well
  • Motile
  • Synergistaceae
  • Thermophilic

ASJC Scopus subject areas

  • Genetics

Cite this

Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314T). / Göker, Markus; Saunders, Elisabeth; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan Fang; Han, Cliff; Tapia, Roxanne; Goodwin, Lynne A.; Pitluck, Sam; Liolios, Konstantinos; Mavromatis, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Chang, Yun Juan; Jeffries, Cynthia D.; Brambilla, Evelyne Marie; Rohde, Manfred; Spring, Stefan; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

In: Standards in Genomic Sciences, Vol. 6, No. 2, 2012, p. 230-239.

Research output: Contribution to journalArticle

Göker, M, Saunders, E, Lapidus, A, Nolan, M, Lucas, S, Hammon, N, Deshpande, S, Cheng, JF, Han, C, Tapia, R, Goodwin, LA, Pitluck, S, Liolios, K, Mavromatis, K, Pagani, I, Ivanova, N, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Chang, YJ, Jeffries, CD, Brambilla, EM, Rohde, M, Spring, S, Detter, JC, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2012, 'Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314T)', Standards in Genomic Sciences, vol. 6, no. 2, pp. 230-239. https://doi.org/10.4056/sigs.2726028
Göker, Markus ; Saunders, Elisabeth ; Lapidus, Alla ; Nolan, Matt ; Lucas, Susan ; Hammon, Nancy ; Deshpande, Shweta ; Cheng, Jan Fang ; Han, Cliff ; Tapia, Roxanne ; Goodwin, Lynne A. ; Pitluck, Sam ; Liolios, Konstantinos ; Mavromatis, Konstantinos ; Pagani, Ioanna ; Ivanova, Natalia ; Mikhailova, Natalia ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Brambilla, Evelyne Marie ; Rohde, Manfred ; Spring, Stefan ; Detter, John C. ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314T). In: Standards in Genomic Sciences. 2012 ; Vol. 6, No. 2. pp. 230-239.
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AU - Saunders, Elisabeth

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AU - Nolan, Matt

AU - Lucas, Susan

AU - Hammon, Nancy

AU - Deshpande, Shweta

AU - Cheng, Jan Fang

AU - Han, Cliff

AU - Tapia, Roxanne

AU - Goodwin, Lynne A.

AU - Pitluck, Sam

AU - Liolios, Konstantinos

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AU - Mikhailova, Natalia

AU - Pati, Amrita

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AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

AU - Brambilla, Evelyne Marie

AU - Rohde, Manfred

AU - Spring, Stefan

AU - Detter, John C.

AU - Woyke, Tanja

AU - Bristow, James

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

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KW - Gram-negative

KW - Marine oil well

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