Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4T)

Iain Anderson; Brittany Held; Alla Lapidus; Matt Nolan; Susan Lucas; Hope Tice; Tijana Glavina Del Rio; Jan Fang Cheng; Cliff Han; Roxanne Tapia; Lynne A. Good-win; Sam Pitluck; Konstantinos Liolios; Konstantinos Mavromatis; Ioanna Pagani; Natalia Ivanova; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Evelyne Marie Brambilla; Manfred Rohde; Stefan Spring; Markus Göker; John C. Detter; Tanja Woyke; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Hans Peter Klenk; Nikos C. Kyrpides

doi:10.4056/sigs.2746047

Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4^T)

Iain Anderson, Brittany Held, Alla Lapidus, Matt Nolan, Susan Lucas, Hope Tice, Tijana Glavina Del Rio, Jan Fang Cheng, Cliff Han, Roxanne Tapia, Lynne A. Good-win, Sam Pitluck, Konstantinos Liolios, Konstantinos Mavromatis, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna PalaniappanMiriam Land, Evelyne Marie Brambilla, Manfred Rohde, Stefan Spring, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Hans Peter Klenk, Nikos C. Kyrpides

Medical Microbiology and Immunology

Research output: Contribution to journal › Article

18 Scopus citations

Abstract

Holophaga foetida Liesack et al. 1995 is a member of the phylum Acidobacteria and is of in-terest for its ability to anaerobically degrade aromatic compounds and for its production of volatile sulfur compounds through a unique pathway. The genome of H. foetida strain TMBS4T is the first to be sequenced for a representative of the class Holophagae. Here we de-scribe the features of this organism, together with the complete genome sequence (improved high quality draft), and annotation. The 4,127,237 bp long chromosome with its 3,615 pro-tein-coding and 57 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original language	English (US)
Pages (from-to)	174-184
Number of pages	11
Journal	Standards in Genomic Sciences
Volume	6
Issue number	2
DOIs	https://doi.org/10.4056/sigs.2746047
State	Published - 2012

Keywords

Acidobacteria
Anaerobic
Chemoorganotrophic
Fresh water mud
GEBA
Gram-negative
Holophagaceae
Mesophilic
Non-motile
Sulfide-methylation

ASJC Scopus subject areas

Genetics

Access to Document

10.4056/sigs.2746047

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Anderson, I., Held, B., Lapidus, A., Nolan, M., Lucas, S., Tice, H., Del Rio, T. G., Cheng, J. F., Han, C., Tapia, R., Good-win, L. A., Pitluck, S., Liolios, K., Mavromatis, K., Pagani, I., Ivanova, N., Mikhailova, N., Pati, A., Chen, A., ... Kyrpides, N. C. (2012). Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4^T). Standards in Genomic Sciences, 6(2), 174-184. https://doi.org/10.4056/sigs.2746047

Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4^T). / Anderson, Iain; Held, Brittany; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Tice, Hope; Del Rio, Tijana Glavina; Cheng, Jan Fang; Han, Cliff; Tapia, Roxanne; Good-win, Lynne A.; Pitluck, Sam; Liolios, Konstantinos; Mavromatis, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Brambilla, Evelyne Marie; Rohde, Manfred; Spring, Stefan; Göker, Markus; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Klenk, Hans Peter; Kyrpides, Nikos C.

In: Standards in Genomic Sciences, Vol. 6, No. 2, 2012, p. 174-184.

Research output: Contribution to journal › Article

Anderson, I, Held, B, Lapidus, A, Nolan, M, Lucas, S, Tice, H, Del Rio, TG, Cheng, JF, Han, C, Tapia, R, Good-win, LA, Pitluck, S, Liolios, K, Mavromatis, K, Pagani, I, Ivanova, N, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Brambilla, EM, Rohde, M, Spring, S, Göker, M, Detter, JC, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Klenk, HP & Kyrpides, NC 2012, 'Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4^T)', Standards in Genomic Sciences, vol. 6, no. 2, pp. 174-184. https://doi.org/10.4056/sigs.2746047

Anderson, Iain ; Held, Brittany ; Lapidus, Alla ; Nolan, Matt ; Lucas, Susan ; Tice, Hope ; Del Rio, Tijana Glavina ; Cheng, Jan Fang ; Han, Cliff ; Tapia, Roxanne ; Good-win, Lynne A. ; Pitluck, Sam ; Liolios, Konstantinos ; Mavromatis, Konstantinos ; Pagani, Ioanna ; Ivanova, Natalia ; Mikhailova, Natalia ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Brambilla, Evelyne Marie ; Rohde, Manfred ; Spring, Stefan ; Göker, Markus ; Detter, John C. ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Klenk, Hans Peter ; Kyrpides, Nikos C. / Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4^T). In: Standards in Genomic Sciences. 2012 ; Vol. 6, No. 2. pp. 174-184.

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