Abstract
Holophaga foetida Liesack et al. 1995 is a member of the phylum Acidobacteria and is of in-terest for its ability to anaerobically degrade aromatic compounds and for its production of volatile sulfur compounds through a unique pathway. The genome of H. foetida strain TMBS4T is the first to be sequenced for a representative of the class Holophagae. Here we de-scribe the features of this organism, together with the complete genome sequence (improved high quality draft), and annotation. The 4,127,237 bp long chromosome with its 3,615 pro-tein-coding and 57 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
| Original language | English (US) |
|---|---|
| Pages (from-to) | 174-184 |
| Number of pages | 11 |
| Journal | Standards in Genomic Sciences |
| Volume | 6 |
| Issue number | 2 |
| DOIs | |
| State | Published - 2012 |
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Keywords
- Acidobacteria
- Anaerobic
- Chemoorganotrophic
- Fresh water mud
- GEBA
- Gram-negative
- Holophagaceae
- Mesophilic
- Non-motile
- Sulfide-methylation
ASJC Scopus subject areas
- Genetics
Cite this
Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4T). / Anderson, Iain; Held, Brittany; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Tice, Hope; Del Rio, Tijana Glavina; Cheng, Jan Fang; Han, Cliff; Tapia, Roxanne; Good-win, Lynne A.; Pitluck, Sam; Liolios, Konstantinos; Mavromatis, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Brambilla, Evelyne Marie; Rohde, Manfred; Spring, Stefan; Göker, Markus; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Klenk, Hans Peter; Kyrpides, Nikos C.
In: Standards in Genomic Sciences, Vol. 6, No. 2, 2012, p. 174-184.Research output: Contribution to journal › Article
}
TY - JOUR
T1 - Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4T)
AU - Anderson, Iain
AU - Held, Brittany
AU - Lapidus, Alla
AU - Nolan, Matt
AU - Lucas, Susan
AU - Tice, Hope
AU - Del Rio, Tijana Glavina
AU - Cheng, Jan Fang
AU - Han, Cliff
AU - Tapia, Roxanne
AU - Good-win, Lynne A.
AU - Pitluck, Sam
AU - Liolios, Konstantinos
AU - Mavromatis, Konstantinos
AU - Pagani, Ioanna
AU - Ivanova, Natalia
AU - Mikhailova, Natalia
AU - Pati, Amrita
AU - Chen, Amy
AU - Palaniappan, Krishna
AU - Land, Miriam
AU - Brambilla, Evelyne Marie
AU - Rohde, Manfred
AU - Spring, Stefan
AU - Göker, Markus
AU - Detter, John C.
AU - Woyke, Tanja
AU - Bristow, James
AU - Eisen, Jonathan A
AU - Markowitz, Victor
AU - Hugenholtz, Philip
AU - Klenk, Hans Peter
AU - Kyrpides, Nikos C.
PY - 2012
Y1 - 2012
N2 - Holophaga foetida Liesack et al. 1995 is a member of the phylum Acidobacteria and is of in-terest for its ability to anaerobically degrade aromatic compounds and for its production of volatile sulfur compounds through a unique pathway. The genome of H. foetida strain TMBS4T is the first to be sequenced for a representative of the class Holophagae. Here we de-scribe the features of this organism, together with the complete genome sequence (improved high quality draft), and annotation. The 4,127,237 bp long chromosome with its 3,615 pro-tein-coding and 57 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
AB - Holophaga foetida Liesack et al. 1995 is a member of the phylum Acidobacteria and is of in-terest for its ability to anaerobically degrade aromatic compounds and for its production of volatile sulfur compounds through a unique pathway. The genome of H. foetida strain TMBS4T is the first to be sequenced for a representative of the class Holophagae. Here we de-scribe the features of this organism, together with the complete genome sequence (improved high quality draft), and annotation. The 4,127,237 bp long chromosome with its 3,615 pro-tein-coding and 57 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
KW - Acidobacteria
KW - Anaerobic
KW - Chemoorganotrophic
KW - Fresh water mud
KW - GEBA
KW - Gram-negative
KW - Holophagaceae
KW - Mesophilic
KW - Non-motile
KW - Sulfide-methylation
UR - http://www.scopus.com/inward/record.url?scp=84863583206&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84863583206&partnerID=8YFLogxK
U2 - 10.4056/sigs.2746047
DO - 10.4056/sigs.2746047
M3 - Article
C2 - 22768361
AN - SCOPUS:84863583206
VL - 6
SP - 174
EP - 184
JO - Environmental Microbiomes
JF - Environmental Microbiomes
SN - 1944-3277
IS - 2
ER -