Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8T)

Iain Anderson, Christine Munk, Alla Lapidus, Matt Nolan, Susan Lucas, Hope Tice, Tijana Glavina Del Rio, Jan Fang Cheng, Cliff Han, Roxanne Tapia, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Konstantinos Mavromatis, Ioanna Pagani, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam LandManfred Rohde, Brian J. Tindall, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Natalia Ivanova

Research output: Contribution to journalArticle

Abstract

Niabella soli Weon et al. 2008 is a member of the Chitinophagaceae, a family within the class Sphingobacteriia that is poorly characterized at the genome level, thus far. N. soli strain JS13-8T is of interest for its ability to produce a variety of glycosyl hydrolases. The ge-nome of N. soli strain JS13-8T is only the second genome sequence of a type strain from the family Chitinophagaceae to be published, and the first one from the genus Niabella. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,697,343 bp long chromosome with its 3,931 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)210-220
Number of pages11
JournalStandards in Genomic Sciences
Volume7
Issue number2
DOIs
StatePublished - 2012

Keywords

  • Aerobic
  • Chemoorganotrophic
  • Chitinophagaceae
  • GEBA
  • Glycosyl hydrolases
  • Gram-negative
  • Mesophilic
  • Non-motile
  • Soil

ASJC Scopus subject areas

  • Genetics

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    Anderson, I., Munk, C., Lapidus, A., Nolan, M., Lucas, S., Tice, H., Del Rio, T. G., Cheng, J. F., Han, C., Tapia, R., Goodwin, L., Pitluck, S., Liolios, K., Mavromatis, K., Pagani, I., Mikhailova, N., Pati, A., Chen, A., Palaniappan, K., ... Ivanova, N. (2012). Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8T). Standards in Genomic Sciences, 7(2), 210-220. https://doi.org/10.4056/sigs.3117229