Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282T)

Thomas Riedel, Brittany Held, Matt Nolan, Susan Lucas, Alla Lapidus, Hope Tice, Tijana Glavina Del Rio, Jan Fang Cheng, Cliff Han, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Konstantinos Mavromatis, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna PalaniappanMiriam Land, Manfred Rohde, Brian J. Tindall, John C. Detter, Markus Göker, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Tanja Woyke

Research output: Contribution to journalArticle

8 Scopus citations

Abstract

Gillisia limnaea Van Trappen et al. 2004 is the type species of the genus Gillisia, which is a mem-ber of the well characterized family Flavobacteriaceae. The genome of G. limnea R-8282T is the first sequenced genome (permanent draft) from a type strain of the genus Gillisia. Here we de-scribe the features of this organism, together with the permanent-draft genome sequence and an-notation. The 3,966,857 bp long chromosome (two scaffolds) with its 3,569 protein-coding and 51 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)107-119
Number of pages13
JournalStandards in Genomic Sciences
Volume7
Issue number1
DOIs
StatePublished - 2012

Keywords

  • Aerobic
  • Chemohete-rotrophic
  • Flavobacteriaceae
  • GEBA
  • Microbial mat
  • Moderately halotolerant
  • Motile
  • Proteorhodopsin
  • Psychrophilic
  • Rod-shaped
  • Yellow-pigmented

ASJC Scopus subject areas

  • Genetics

Fingerprint Dive into the research topics of 'Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282<sup>T</sup>)'. Together they form a unique fingerprint.

  • Cite this

    Riedel, T., Held, B., Nolan, M., Lucas, S., Lapidus, A., Tice, H., Del Rio, T. G., Cheng, J. F., Han, C., Tapia, R., Goodwin, L. A., Pitluck, S., Liolios, K., Mavromatis, K., Pagani, I., Ivanova, N., Mikhailova, N., Pati, A., Chen, A., ... Woyke, T. (2012). Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282T). Standards in Genomic Sciences, 7(1), 107-119. https://doi.org/10.4056/sigs.3216895