Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282T)

Thomas Riedel, Brittany Held, Matt Nolan, Susan Lucas, Alla Lapidus, Hope Tice, Tijana Glavina Del Rio, Jan Fang Cheng, Cliff Han, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Konstantinos Mavromatis, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna PalaniappanMiriam Land, Manfred Rohde, Brian J. Tindall, John C. Detter, Markus Göker, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Tanja Woyke

Research output: Contribution to journalArticle

8 Citations (Scopus)

Abstract

Gillisia limnaea Van Trappen et al. 2004 is the type species of the genus Gillisia, which is a mem-ber of the well characterized family Flavobacteriaceae. The genome of G. limnea R-8282T is the first sequenced genome (permanent draft) from a type strain of the genus Gillisia. Here we de-scribe the features of this organism, together with the permanent-draft genome sequence and an-notation. The 3,966,857 bp long chromosome (two scaffolds) with its 3,569 protein-coding and 51 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)107-119
Number of pages13
JournalStandards in Genomic Sciences
Volume7
Issue number1
DOIs
StatePublished - 2012

Fingerprint

Flavobacterium
Rhodopsin
Genome
Flavobacteriaceae
Encyclopedias
Archaea
Chromosomes
RNA
Bacteria
Genes
Proteins

Keywords

  • Aerobic
  • Chemohete-rotrophic
  • Flavobacteriaceae
  • GEBA
  • Microbial mat
  • Moderately halotolerant
  • Motile
  • Proteorhodopsin
  • Psychrophilic
  • Rod-shaped
  • Yellow-pigmented

ASJC Scopus subject areas

  • Genetics

Cite this

Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282T). / Riedel, Thomas; Held, Brittany; Nolan, Matt; Lucas, Susan; Lapidus, Alla; Tice, Hope; Del Rio, Tijana Glavina; Cheng, Jan Fang; Han, Cliff; Tapia, Roxanne; Goodwin, Lynne A.; Pitluck, Sam; Liolios, Konstantinos; Mavromatis, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Rohde, Manfred; Tindall, Brian J.; Detter, John C.; Göker, Markus; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Woyke, Tanja.

In: Standards in Genomic Sciences, Vol. 7, No. 1, 2012, p. 107-119.

Research output: Contribution to journalArticle

Riedel, T, Held, B, Nolan, M, Lucas, S, Lapidus, A, Tice, H, Del Rio, TG, Cheng, JF, Han, C, Tapia, R, Goodwin, LA, Pitluck, S, Liolios, K, Mavromatis, K, Pagani, I, Ivanova, N, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Rohde, M, Tindall, BJ, Detter, JC, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Woyke, T 2012, 'Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282T)', Standards in Genomic Sciences, vol. 7, no. 1, pp. 107-119. https://doi.org/10.4056/sigs.3216895
Riedel, Thomas ; Held, Brittany ; Nolan, Matt ; Lucas, Susan ; Lapidus, Alla ; Tice, Hope ; Del Rio, Tijana Glavina ; Cheng, Jan Fang ; Han, Cliff ; Tapia, Roxanne ; Goodwin, Lynne A. ; Pitluck, Sam ; Liolios, Konstantinos ; Mavromatis, Konstantinos ; Pagani, Ioanna ; Ivanova, Natalia ; Mikhailova, Natalia ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Rohde, Manfred ; Tindall, Brian J. ; Detter, John C. ; Göker, Markus ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Woyke, Tanja. / Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282T). In: Standards in Genomic Sciences. 2012 ; Vol. 7, No. 1. pp. 107-119.
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