Abstract
Gillisia limnaea Van Trappen et al. 2004 is the type species of the genus Gillisia, which is a mem-ber of the well characterized family Flavobacteriaceae. The genome of G. limnea R-8282T is the first sequenced genome (permanent draft) from a type strain of the genus Gillisia. Here we de-scribe the features of this organism, together with the permanent-draft genome sequence and an-notation. The 3,966,857 bp long chromosome (two scaffolds) with its 3,569 protein-coding and 51 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
| Original language | English (US) |
|---|---|
| Pages (from-to) | 107-119 |
| Number of pages | 13 |
| Journal | Standards in Genomic Sciences |
| Volume | 7 |
| Issue number | 1 |
| DOIs | |
| State | Published - 2012 |
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Keywords
- Aerobic
- Chemohete-rotrophic
- Flavobacteriaceae
- GEBA
- Microbial mat
- Moderately halotolerant
- Motile
- Proteorhodopsin
- Psychrophilic
- Rod-shaped
- Yellow-pigmented
ASJC Scopus subject areas
- Genetics
Cite this
Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282T). / Riedel, Thomas; Held, Brittany; Nolan, Matt; Lucas, Susan; Lapidus, Alla; Tice, Hope; Del Rio, Tijana Glavina; Cheng, Jan Fang; Han, Cliff; Tapia, Roxanne; Goodwin, Lynne A.; Pitluck, Sam; Liolios, Konstantinos; Mavromatis, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Rohde, Manfred; Tindall, Brian J.; Detter, John C.; Göker, Markus; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Woyke, Tanja.
In: Standards in Genomic Sciences, Vol. 7, No. 1, 2012, p. 107-119.Research output: Contribution to journal › Article
}
TY - JOUR
T1 - Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282T)
AU - Riedel, Thomas
AU - Held, Brittany
AU - Nolan, Matt
AU - Lucas, Susan
AU - Lapidus, Alla
AU - Tice, Hope
AU - Del Rio, Tijana Glavina
AU - Cheng, Jan Fang
AU - Han, Cliff
AU - Tapia, Roxanne
AU - Goodwin, Lynne A.
AU - Pitluck, Sam
AU - Liolios, Konstantinos
AU - Mavromatis, Konstantinos
AU - Pagani, Ioanna
AU - Ivanova, Natalia
AU - Mikhailova, Natalia
AU - Pati, Amrita
AU - Chen, Amy
AU - Palaniappan, Krishna
AU - Land, Miriam
AU - Rohde, Manfred
AU - Tindall, Brian J.
AU - Detter, John C.
AU - Göker, Markus
AU - Bristow, James
AU - Eisen, Jonathan A
AU - Markowitz, Victor
AU - Hugenholtz, Philip
AU - Kyrpides, Nikos C.
AU - Klenk, Hans Peter
AU - Woyke, Tanja
PY - 2012
Y1 - 2012
N2 - Gillisia limnaea Van Trappen et al. 2004 is the type species of the genus Gillisia, which is a mem-ber of the well characterized family Flavobacteriaceae. The genome of G. limnea R-8282T is the first sequenced genome (permanent draft) from a type strain of the genus Gillisia. Here we de-scribe the features of this organism, together with the permanent-draft genome sequence and an-notation. The 3,966,857 bp long chromosome (two scaffolds) with its 3,569 protein-coding and 51 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
AB - Gillisia limnaea Van Trappen et al. 2004 is the type species of the genus Gillisia, which is a mem-ber of the well characterized family Flavobacteriaceae. The genome of G. limnea R-8282T is the first sequenced genome (permanent draft) from a type strain of the genus Gillisia. Here we de-scribe the features of this organism, together with the permanent-draft genome sequence and an-notation. The 3,966,857 bp long chromosome (two scaffolds) with its 3,569 protein-coding and 51 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
KW - Aerobic
KW - Chemohete-rotrophic
KW - Flavobacteriaceae
KW - GEBA
KW - Microbial mat
KW - Moderately halotolerant
KW - Motile
KW - Proteorhodopsin
KW - Psychrophilic
KW - Rod-shaped
KW - Yellow-pigmented
UR - http://www.scopus.com/inward/record.url?scp=84868351919&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84868351919&partnerID=8YFLogxK
U2 - 10.4056/sigs.3216895
DO - 10.4056/sigs.3216895
M3 - Article
C2 - 23450183
AN - SCOPUS:84868351919
VL - 7
SP - 107
EP - 119
JO - Environmental Microbiomes
JF - Environmental Microbiomes
SN - 1944-3277
IS - 1
ER -