Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282T)

Thomas Riedel; Brittany Held; Matt Nolan; Susan Lucas; Alla Lapidus; Hope Tice; Tijana Glavina Del Rio; Jan Fang Cheng; Cliff Han; Roxanne Tapia; Lynne A. Goodwin; Sam Pitluck; Konstantinos Liolios; Konstantinos Mavromatis; Ioanna Pagani; Natalia Ivanova; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Manfred Rohde; Brian J. Tindall; John C. Detter; Markus Göker; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C. Kyrpides; Hans Peter Klenk; Tanja Woyke

doi:10.4056/sigs.3216895

Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282^T)

Thomas Riedel, Brittany Held, Matt Nolan, Susan Lucas, Alla Lapidus, Hope Tice, Tijana Glavina Del Rio, Jan Fang Cheng, Cliff Han, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Konstantinos Mavromatis, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna PalaniappanMiriam Land, Manfred Rohde, Brian J. Tindall, John C. Detter, Markus Göker, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Tanja Woyke

Medical Microbiology and Immunology

Research output: Contribution to journal › Article

8 Scopus citations

Abstract

Gillisia limnaea Van Trappen et al. 2004 is the type species of the genus Gillisia, which is a mem-ber of the well characterized family Flavobacteriaceae. The genome of G. limnea R-8282^T is the first sequenced genome (permanent draft) from a type strain of the genus Gillisia. Here we de-scribe the features of this organism, together with the permanent-draft genome sequence and an-notation. The 3,966,857 bp long chromosome (two scaffolds) with its 3,569 protein-coding and 51 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original language	English (US)
Pages (from-to)	107-119
Number of pages	13
Journal	Standards in Genomic Sciences
Volume	7
Issue number	1
DOIs	https://doi.org/10.4056/sigs.3216895
State	Published - 2012

Keywords

Aerobic
Chemohete-rotrophic
Flavobacteriaceae
GEBA
Microbial mat
Moderately halotolerant
Motile
Proteorhodopsin
Psychrophilic
Rod-shaped
Yellow-pigmented

ASJC Scopus subject areas

Genetics

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10.4056/sigs.3216895

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Riedel, T., Held, B., Nolan, M., Lucas, S., Lapidus, A., Tice, H., Del Rio, T. G., Cheng, J. F., Han, C., Tapia, R., Goodwin, L. A., Pitluck, S., Liolios, K., Mavromatis, K., Pagani, I., Ivanova, N., Mikhailova, N., Pati, A., Chen, A., ... Woyke, T. (2012). Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282^T). Standards in Genomic Sciences, 7(1), 107-119. https://doi.org/10.4056/sigs.3216895

Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282^T). / Riedel, Thomas; Held, Brittany; Nolan, Matt; Lucas, Susan; Lapidus, Alla; Tice, Hope; Del Rio, Tijana Glavina; Cheng, Jan Fang; Han, Cliff; Tapia, Roxanne; Goodwin, Lynne A.; Pitluck, Sam; Liolios, Konstantinos; Mavromatis, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Rohde, Manfred; Tindall, Brian J.; Detter, John C.; Göker, Markus; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Woyke, Tanja.

In: Standards in Genomic Sciences, Vol. 7, No. 1, 2012, p. 107-119.

Research output: Contribution to journal › Article

Riedel, T, Held, B, Nolan, M, Lucas, S, Lapidus, A, Tice, H, Del Rio, TG, Cheng, JF, Han, C, Tapia, R, Goodwin, LA, Pitluck, S, Liolios, K, Mavromatis, K, Pagani, I, Ivanova, N, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Rohde, M, Tindall, BJ, Detter, JC, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Woyke, T 2012, 'Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282^T)', Standards in Genomic Sciences, vol. 7, no. 1, pp. 107-119. https://doi.org/10.4056/sigs.3216895

Riedel, Thomas ; Held, Brittany ; Nolan, Matt ; Lucas, Susan ; Lapidus, Alla ; Tice, Hope ; Del Rio, Tijana Glavina ; Cheng, Jan Fang ; Han, Cliff ; Tapia, Roxanne ; Goodwin, Lynne A. ; Pitluck, Sam ; Liolios, Konstantinos ; Mavromatis, Konstantinos ; Pagani, Ioanna ; Ivanova, Natalia ; Mikhailova, Natalia ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Rohde, Manfred ; Tindall, Brian J. ; Detter, John C. ; Göker, Markus ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Woyke, Tanja. / Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282^T). In: Standards in Genomic Sciences. 2012 ; Vol. 7, No. 1. pp. 107-119.

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abstract = "Gillisia limnaea Van Trappen et al. 2004 is the type species of the genus Gillisia, which is a mem-ber of the well characterized family Flavobacteriaceae. The genome of G. limnea R-8282T is the first sequenced genome (permanent draft) from a type strain of the genus Gillisia. Here we de-scribe the features of this organism, together with the permanent-draft genome sequence and an-notation. The 3,966,857 bp long chromosome (two scaffolds) with its 3,569 protein-coding and 51 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.",

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