Genome sequence of Frateuria aurantia type strain (Kondô 67T), a xanthomonade isolated from Lilium auratium Lindl

Iain Anderson, Huzuki Teshima, Matt Nolan, Alla Lapidus, Hope Tice, Tijana Glavina Del Rio, Jan Fang Cheng, Cliff Han, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Konstantinos Mavromatis, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam LandManfred Rohde, Elke Lang, John C. Detter, Markus Göker, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk

Research output: Contribution to journalArticle

Abstract

Frateuria aurantia (ex Kondô and Ameyama 1958) Swings et al. 1980 is a member of the bispecific genus Frateuria in the family Xanthomonadaceae, which is already heavily tar-geted for non-type strain genome sequencing. Strain Kondô 67T was initially (1958) identi-fied as a member of 'Acetobacter aurantius', a name that was not considered for the ap-proved list. Kondô 67T was therefore later designated as the type strain of the newly pro-posed acetogenic species Frateuria aurantia. The strain is of interest because of its triterpenoids (hopane family). F. aurantia Kondô 67T is the first member of the genus Frateura whose genome sequence has been deciphered, and here we describe the features of this organism, together with the complete genome sequence and annotation. The 3,603,458-bp long chromosome with its 3,200 protein-coding and 88 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)83-92
Number of pages10
JournalStandards in Genomic Sciences
Volume9
Issue number1
DOIs
StatePublished - 2013

Fingerprint

Lilium
Genome
Xanthomonadaceae
Acetobacter
Encyclopedias
Tars
Archaea
Names
Chromosomes
RNA
Bacteria
Genes
Proteins

Keywords

  • 'Acetobacter aurantius'
  • Acetogenic
  • GEBA
  • Mesophilic
  • Motile
  • Rod-shaped
  • Strictly aerobic
  • Xanthomonadaceae

ASJC Scopus subject areas

  • Genetics

Cite this

Genome sequence of Frateuria aurantia type strain (Kondô 67T), a xanthomonade isolated from Lilium auratium Lindl. / Anderson, Iain; Teshima, Huzuki; Nolan, Matt; Lapidus, Alla; Tice, Hope; Del Rio, Tijana Glavina; Cheng, Jan Fang; Han, Cliff; Tapia, Roxanne; Goodwin, Lynne A.; Pitluck, Sam; Liolios, Konstantinos; Mavromatis, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Rohde, Manfred; Lang, Elke; Detter, John C.; Göker, Markus; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

In: Standards in Genomic Sciences, Vol. 9, No. 1, 2013, p. 83-92.

Research output: Contribution to journalArticle

Anderson, I, Teshima, H, Nolan, M, Lapidus, A, Tice, H, Del Rio, TG, Cheng, JF, Han, C, Tapia, R, Goodwin, LA, Pitluck, S, Liolios, K, Mavromatis, K, Pagani, I, Ivanova, N, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Rohde, M, Lang, E, Detter, JC, Göker, M, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2013, 'Genome sequence of Frateuria aurantia type strain (Kondô 67T), a xanthomonade isolated from Lilium auratium Lindl', Standards in Genomic Sciences, vol. 9, no. 1, pp. 83-92. https://doi.org/10.4056/sigs.4338002
Anderson, Iain ; Teshima, Huzuki ; Nolan, Matt ; Lapidus, Alla ; Tice, Hope ; Del Rio, Tijana Glavina ; Cheng, Jan Fang ; Han, Cliff ; Tapia, Roxanne ; Goodwin, Lynne A. ; Pitluck, Sam ; Liolios, Konstantinos ; Mavromatis, Konstantinos ; Pagani, Ioanna ; Ivanova, Natalia ; Mikhailova, Natalia ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Rohde, Manfred ; Lang, Elke ; Detter, John C. ; Göker, Markus ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Genome sequence of Frateuria aurantia type strain (Kondô 67T), a xanthomonade isolated from Lilium auratium Lindl. In: Standards in Genomic Sciences. 2013 ; Vol. 9, No. 1. pp. 83-92.
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AU - Tice, Hope

AU - Del Rio, Tijana Glavina

AU - Cheng, Jan Fang

AU - Han, Cliff

AU - Tapia, Roxanne

AU - Goodwin, Lynne A.

AU - Pitluck, Sam

AU - Liolios, Konstantinos

AU - Mavromatis, Konstantinos

AU - Pagani, Ioanna

AU - Ivanova, Natalia

AU - Mikhailova, Natalia

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AU - Land, Miriam

AU - Rohde, Manfred

AU - Lang, Elke

AU - Detter, John C.

AU - Göker, Markus

AU - Woyke, Tanja

AU - Bristow, James

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

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