Evaluation of nucleic acid preservation cards for West Nile virus testing in dead birds

Leslie Foss, William Reisen, Ying Fang, Vicki Kramer, Kerry Padgett

Research output: Contribution to journalArticle

3 Citations (Scopus)

Abstract

The California West Nile virus (WNV) Dead Bird Surveillance Program (DBSP) is an important component of WNV surveillance in the state. We evaluated FTA™and RNASound™ cards as an alternative method for sampling dead birds for WNV molecular testing as these cards allow for more cost effective, rapid, and safer diagnostic sampling than the shipment of bird carcasses. To evaluate accuracy of results among avian sampling regimes, Reverse-Transcription Polymerase Chain Reaction (RT-PCR) results from FTA™and RNASound™cards were compared with results from kidney tissue, brain tissue, or oral swabs in lysis buffer in 2012-2013. In addition, RT-PCR results were compared with results from oral swabs tested by rapid antigen tests (RAMP™and VecTOR™). While test results from the cards were not as sensitive as kidney tissue testing, they were more likely to provide accurate results than rapid antigen tests, and detected WNV in corvids as well as in other passerines, raptors, and waterfowl. Overall, WNV RT-PCR cycle threshold (Ct) scores from the cards were higher than those from tissue testing, but both card products displayed high sensitivity and specificity. American Crow samples provided the highest sensitivity. The cards also proved to be easier and more convenient vehicles for collecting and shipping samples, and in 2014 our program launched use of RNASound™cards in the DBSP. Both FTA™and RNASound™products displayed 96% agreement with tissue results and are an adequate alternative sampling method for WNV dead bird testing.

Original languageEnglish (US)
Article numbere0157555
JournalPLoS One
Volume11
Issue number6
DOIs
StatePublished - Jun 1 2016

Fingerprint

West Nile virus
Birds
Viruses
Nucleic Acids
nucleic acids
Tissue
birds
Polymerase chain reaction
Testing
Transcription
Sampling
Reverse Transcription
testing
reverse transcriptase polymerase chain reaction
Polymerase Chain Reaction
sampling
California Encephalitis Viruses
monitoring
mouth
Raptors

ASJC Scopus subject areas

  • Medicine(all)
  • Biochemistry, Genetics and Molecular Biology(all)
  • Agricultural and Biological Sciences(all)

Cite this

Evaluation of nucleic acid preservation cards for West Nile virus testing in dead birds. / Foss, Leslie; Reisen, William; Fang, Ying; Kramer, Vicki; Padgett, Kerry.

In: PLoS One, Vol. 11, No. 6, e0157555, 01.06.2016.

Research output: Contribution to journalArticle

Foss, Leslie ; Reisen, William ; Fang, Ying ; Kramer, Vicki ; Padgett, Kerry. / Evaluation of nucleic acid preservation cards for West Nile virus testing in dead birds. In: PLoS One. 2016 ; Vol. 11, No. 6.
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