TY - GEN
T1 - Domain Adaptation for Trauma Mortality Prediction in EHRs with Feature Disparity
AU - Zhangy, Xinlu
AU - Liy, Shiyang
AU - Chengy, Zhuowei
AU - Callcut, Rachael
AU - Petzold, Linda
N1 - Funding Information:
This work was funded by the National Institutes for Health (NIH) grant NIH 7R01HL149670.
Publisher Copyright:
© 2021 IEEE.
PY - 2021
Y1 - 2021
N2 - Trauma mortality prediction from electronic health records (EHRs) with machine learning models has received growing attention in medical fields, but EHRs in different hospitals and sub-medical domain populations are often scarce due to expensive collection processes or privacy issues. Domain Adaptation (DA) has emerged as a promising approach in computer vision and natural language processing to improve model performance in small data regimes by leveraging domain-invariant knowledge learned from a different yet related large source dataset. However, its applicability in trauma mortality prediction is challenging since EHRs collected from different hospital systems encounter feature disparity, i.e. distinct features between the source and target domain data. This paper demonstrates the effectiveness of three DA techniques in trauma mortality prediction, with a private encoding strategy that maps EHRs in both source and target domains with different raw features into the same latent space to alleviate feature disparity issues. Our experimental results on two real-world EHR datasets with various training data scenarios show that DA can improve mortality prediction consistently and significantly with private encoding. Finally, an ablation study manifests the importance of modeling feature disparity in DA, and 2-d t-SNE analysis explains its effectiveness.
AB - Trauma mortality prediction from electronic health records (EHRs) with machine learning models has received growing attention in medical fields, but EHRs in different hospitals and sub-medical domain populations are often scarce due to expensive collection processes or privacy issues. Domain Adaptation (DA) has emerged as a promising approach in computer vision and natural language processing to improve model performance in small data regimes by leveraging domain-invariant knowledge learned from a different yet related large source dataset. However, its applicability in trauma mortality prediction is challenging since EHRs collected from different hospital systems encounter feature disparity, i.e. distinct features between the source and target domain data. This paper demonstrates the effectiveness of three DA techniques in trauma mortality prediction, with a private encoding strategy that maps EHRs in both source and target domains with different raw features into the same latent space to alleviate feature disparity issues. Our experimental results on two real-world EHR datasets with various training data scenarios show that DA can improve mortality prediction consistently and significantly with private encoding. Finally, an ablation study manifests the importance of modeling feature disparity in DA, and 2-d t-SNE analysis explains its effectiveness.
KW - Adversarial Learning
KW - Contrastive Learning
KW - Domain Adaptation
KW - Electronic Health Record
KW - Mortality Prediction
UR - http://www.scopus.com/inward/record.url?scp=85125204448&partnerID=8YFLogxK
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U2 - 10.1109/BIBM52615.2021.9669798
DO - 10.1109/BIBM52615.2021.9669798
M3 - Conference contribution
AN - SCOPUS:85125204448
T3 - Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021
SP - 1145
EP - 1152
BT - Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021
A2 - Huang, Yufei
A2 - Kurgan, Lukasz
A2 - Luo, Feng
A2 - Hu, Xiaohua Tony
A2 - Chen, Yidong
A2 - Dougherty, Edward
A2 - Kloczkowski, Andrzej
A2 - Li, Yaohang
PB - Institute of Electrical and Electronics Engineers Inc.
T2 - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021
Y2 - 9 December 2021 through 12 December 2021
ER -