DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization.

Steven B. Cannon, Alexander Kozik, Brian Chan, Richard W Michelmore, Nevin D. Young

Research output: Contribution to journalArticle

47 Scopus citations

Abstract

The DiagHunter and GenoPix2D applications work together to enable genomic comparisons and exploration at both genome-wide and single-gene scales. DiagHunter identifies homologous regions (synteny blocks) within or between genomes. DiagHunter works efficiently with diverse, large datasets to predict extended and interrupted synteny blocks and to generate graphical and text output quickly. GenoPix2D allows interactive display of synteny blocks and other genomic features, as well as querying by annotation and by sequence similarity.

Original languageEnglish (US)
JournalGenome Biology
Volume4
Issue number10
StatePublished - 2003
Externally publishedYes

ASJC Scopus subject areas

  • Genetics

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  • Cite this

    Cannon, S. B., Kozik, A., Chan, B., Michelmore, R. W., & Young, N. D. (2003). DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization. Genome Biology, 4(10).