Computationally efficient perturbative forward modeling for 3D multispectral bioluminescence and fluorescence tomography

Joyita Dutta, Sangtae Ahn, Changqing Li, Abhijit Chaudhari, Simon R Cherry, Richard M. Leahy

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Citations (Scopus)

Abstract

The forward problem of optical bioluminescence and fluorescence tomography seeks to determine, for a given 3D source distribution, the photon density on the surface of an animal. Photon transport through tissues is commonly modeled by the diffusion equation. The challenge, then, is to accurately and efficiently solve the diffusion equation for a realistic animal geometry and heterogeneous tissue types. Fast analytical solvers are available that can be applied to arbitrary geometries but assume homogeneity of tissue optical properties and hence have limited accuracy. The finite element method (FEM) with volume tessellation allows reasonably accurate modeling of both animal geometry and tissue heterogeneity, but this approach is computationally intensive. The computational challenge is heightened when one is working with multispectral data to improve source localization and conditioning of the inverse problem. Here we present a fast forward model based on the Born approximation that falls in between these two approaches. Our model introduces tissue heterogeneity as perturbations in diffusion and absorption coefficients at rectangular grid points inside a mouse atlas. These reflect as a correction term added to the homogeneous forward model. We have tested our model by performing source localization studies first with a biolumnescence simulation setup and then with an experimental setup using a fluorescent source embedded in an inhomogeneous phantom that mimicks tissue optical properties.

Original languageEnglish (US)
Title of host publicationProgress in Biomedical Optics and Imaging - Proceedings of SPIE
Volume6913
DOIs
StatePublished - 2008
EventMedical Imaging 2008 - Physics of Medical Imaging - San Diego, CA, United States
Duration: Feb 18 2008Feb 21 2008

Other

OtherMedical Imaging 2008 - Physics of Medical Imaging
CountryUnited States
CitySan Diego, CA
Period2/18/082/21/08

Fingerprint

Bioluminescence
Tomography
Fluorescence
Tissue
Animals
Geometry
Photons
Optical properties
Born approximation
Inverse problems
Finite element method

Keywords

  • Bioluminescence tomography
  • Born approximation
  • Fluorescence tomography
  • Forward model
  • Multispectral

ASJC Scopus subject areas

  • Engineering(all)

Cite this

Dutta, J., Ahn, S., Li, C., Chaudhari, A., Cherry, S. R., & Leahy, R. M. (2008). Computationally efficient perturbative forward modeling for 3D multispectral bioluminescence and fluorescence tomography. In Progress in Biomedical Optics and Imaging - Proceedings of SPIE (Vol. 6913). [69130C] https://doi.org/10.1117/12.770755

Computationally efficient perturbative forward modeling for 3D multispectral bioluminescence and fluorescence tomography. / Dutta, Joyita; Ahn, Sangtae; Li, Changqing; Chaudhari, Abhijit; Cherry, Simon R; Leahy, Richard M.

Progress in Biomedical Optics and Imaging - Proceedings of SPIE. Vol. 6913 2008. 69130C.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dutta, J, Ahn, S, Li, C, Chaudhari, A, Cherry, SR & Leahy, RM 2008, Computationally efficient perturbative forward modeling for 3D multispectral bioluminescence and fluorescence tomography. in Progress in Biomedical Optics and Imaging - Proceedings of SPIE. vol. 6913, 69130C, Medical Imaging 2008 - Physics of Medical Imaging, San Diego, CA, United States, 2/18/08. https://doi.org/10.1117/12.770755
Dutta J, Ahn S, Li C, Chaudhari A, Cherry SR, Leahy RM. Computationally efficient perturbative forward modeling for 3D multispectral bioluminescence and fluorescence tomography. In Progress in Biomedical Optics and Imaging - Proceedings of SPIE. Vol. 6913. 2008. 69130C https://doi.org/10.1117/12.770755
Dutta, Joyita ; Ahn, Sangtae ; Li, Changqing ; Chaudhari, Abhijit ; Cherry, Simon R ; Leahy, Richard M. / Computationally efficient perturbative forward modeling for 3D multispectral bioluminescence and fluorescence tomography. Progress in Biomedical Optics and Imaging - Proceedings of SPIE. Vol. 6913 2008.
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