Complete genome sequence of Tsukamurella paurometabola type strain (no. 33 T)

A. Christine Munk; Alla Lapidus; Susan Lucas; Matt Nolan; Hope Tice; Jan Fang Cheng; Tijana Glavina del Rio; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Marcel Huntemann; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Roxanne Tapia; Cliff Han; Miriam Land; Loren Hauser; Yun Juan Chang; Cynthia D. Jeffries; Thomas Brettin; Montri Yasawong; Evelyne Marie Brambilla; Manfred Rohde; Johannes Sikorski; Markus Göker; John C. Detter; Tanja Woyke; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C. Kyrpides; Hans Peter Klenk

doi:10.4056/sigs.1894556

Complete genome sequence of Tsukamurella paurometabola type strain (no. 33 ^T)

A. Christine Munk, Alla Lapidus, Susan Lucas, Matt Nolan, Hope Tice, Jan Fang Cheng, Tijana Glavina del Rio, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Marcel Huntemann, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Roxanne Tapia, Cliff Han, Miriam LandLoren Hauser, Yun Juan Chang, Cynthia D. Jeffries, Thomas Brettin, Montri Yasawong, Evelyne Marie Brambilla, Manfred Rohde, Johannes Sikorski, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk

Medical Microbiology and Immunology

Research output: Contribution to journal › Article

8 Scopus citations

Abstract

Tsukamurella paurometabola corrig. (Steinhaus 1941) Collins et al. 1988 is the type species of the genus Tsukamurella, which is the type genus to the family Tsukamurellaceae. The species is not only of interest because of its isolated phylogenetic location, but also because it is a human opportunistic pathogen with some strains of the species reported to cause lung infection, lethal meningitis, and necrotizing tenosynovitis. This is the first completed genome sequence of a member of the genus Tsukamurella and the first genome sequence of a member of the family Tsukamurellaceae. The 4,479,724 bp long genome contains a 99,806 bp long plasmid and a total of 4,335 protein-coding and 56 RNA genes, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original language	English (US)
Pages (from-to)	342-351
Number of pages	10
Journal	Standards in Genomic Sciences
Volume	4
Issue number	3
DOIs	https://doi.org/10.4056/sigs.1894556
State	Published - 2011

Fingerprint

Keywords

Chemoorganotrophic
GEBA
Gram-positive
Mesophilic
Metachromatic granules
Non-motile
Obligately aerobic
Opportunistic pathogen
Tsukamurellaceae

ASJC Scopus subject areas

Genetics

Cite this

Christine Munk, A., Lapidus, A., Lucas, S., Nolan, M., Tice, H., Cheng, J. F., del Rio, T. G., Goodwin, L., Pitluck, S., Liolios, K., Huntemann, M., Ivanova, N., Mavromatis, K., Mikhailova, N., Pati, A., Chen, A., Palaniappan, K., Tapia, R., Han, C., ... Klenk, H. P. (2011). Complete genome sequence of Tsukamurella paurometabola type strain (no. 33 ^T). Standards in Genomic Sciences, 4(3), 342-351. https://doi.org/10.4056/sigs.1894556

Complete genome sequence of Tsukamurella paurometabola type strain (no. 33 ^T). / Christine Munk, A.; Lapidus, Alla; Lucas, Susan; Nolan, Matt; Tice, Hope; Cheng, Jan Fang; del Rio, Tijana Glavina; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Huntemann, Marcel; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Tapia, Roxanne; Han, Cliff; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Brettin, Thomas; Yasawong, Montri; Brambilla, Evelyne Marie; Rohde, Manfred; Sikorski, Johannes; Göker, Markus; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

In: Standards in Genomic Sciences, Vol. 4, No. 3, 2011, p. 342-351.

Research output: Contribution to journal › Article

Christine Munk, A, Lapidus, A, Lucas, S, Nolan, M, Tice, H, Cheng, JF, del Rio, TG, Goodwin, L, Pitluck, S, Liolios, K, Huntemann, M, Ivanova, N, Mavromatis, K, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Tapia, R, Han, C, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Brettin, T, Yasawong, M, Brambilla, EM, Rohde, M, Sikorski, J, Göker, M, Detter, JC, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2011, 'Complete genome sequence of Tsukamurella paurometabola type strain (no. 33 ^T)', Standards in Genomic Sciences, vol. 4, no. 3, pp. 342-351. https://doi.org/10.4056/sigs.1894556

Christine Munk, A. ; Lapidus, Alla ; Lucas, Susan ; Nolan, Matt ; Tice, Hope ; Cheng, Jan Fang ; del Rio, Tijana Glavina ; Goodwin, Lynne ; Pitluck, Sam ; Liolios, Konstantinos ; Huntemann, Marcel ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Mikhailova, Natalia ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Tapia, Roxanne ; Han, Cliff ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Brettin, Thomas ; Yasawong, Montri ; Brambilla, Evelyne Marie ; Rohde, Manfred ; Sikorski, Johannes ; Göker, Markus ; Detter, John C. ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Complete genome sequence of Tsukamurella paurometabola type strain (no. 33 ^T). In: Standards in Genomic Sciences. 2011 ; Vol. 4, No. 3. pp. 342-351.

@article{3ad81ef77c2c47ef9774955e5cb7d28c,

title = "Complete genome sequence of Tsukamurella paurometabola type strain (no. 33 T)",

abstract = "Tsukamurella paurometabola corrig. (Steinhaus 1941) Collins et al. 1988 is the type species of the genus Tsukamurella, which is the type genus to the family Tsukamurellaceae. The species is not only of interest because of its isolated phylogenetic location, but also because it is a human opportunistic pathogen with some strains of the species reported to cause lung infection, lethal meningitis, and necrotizing tenosynovitis. This is the first completed genome sequence of a member of the genus Tsukamurella and the first genome sequence of a member of the family Tsukamurellaceae. The 4,479,724 bp long genome contains a 99,806 bp long plasmid and a total of 4,335 protein-coding and 56 RNA genes, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.",

keywords = "Chemoorganotrophic, GEBA, Gram-positive, Mesophilic, Metachromatic granules, Non-motile, Obligately aerobic, Opportunistic pathogen, Tsukamurellaceae",

author = "{Christine Munk}, A. and Alla Lapidus and Susan Lucas and Matt Nolan and Hope Tice and Cheng, {Jan Fang} and {del Rio}, {Tijana Glavina} and Lynne Goodwin and Sam Pitluck and Konstantinos Liolios and Marcel Huntemann and Natalia Ivanova and Konstantinos Mavromatis and Natalia Mikhailova and Amrita Pati and Amy Chen and Krishna Palaniappan and Roxanne Tapia and Cliff Han and Miriam Land and Loren Hauser and Chang, {Yun Juan} and Jeffries, {Cynthia D.} and Thomas Brettin and Montri Yasawong and Brambilla, {Evelyne Marie} and Manfred Rohde and Johannes Sikorski and Markus G{\"o}ker and Detter, {John C.} and Tanja Woyke and James Bristow and Eisen, {Jonathan A} and Victor Markowitz and Philip Hugenholtz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter}",

year = "2011",

doi = "10.4056/sigs.1894556",

language = "English (US)",

volume = "4",

pages = "342--351",

journal = "Environmental Microbiomes",

issn = "1944-3277",

publisher = "BioMed Central Ltd.",

number = "3",

}

TY - JOUR

T1 - Complete genome sequence of Tsukamurella paurometabola type strain (no. 33 T)

AU - Christine Munk, A.

AU - Lapidus, Alla

AU - Lucas, Susan

AU - Nolan, Matt

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - del Rio, Tijana Glavina

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Liolios, Konstantinos

AU - Huntemann, Marcel

AU - Ivanova, Natalia

AU - Mavromatis, Konstantinos

AU - Mikhailova, Natalia

AU - Pati, Amrita

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Tapia, Roxanne

AU - Han, Cliff

AU - Land, Miriam

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

AU - Brettin, Thomas

AU - Yasawong, Montri

AU - Brambilla, Evelyne Marie

AU - Rohde, Manfred

AU - Sikorski, Johannes

AU - Göker, Markus

AU - Detter, John C.

AU - Woyke, Tanja

AU - Bristow, James

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

PY - 2011

Y1 - 2011

N2 - Tsukamurella paurometabola corrig. (Steinhaus 1941) Collins et al. 1988 is the type species of the genus Tsukamurella, which is the type genus to the family Tsukamurellaceae. The species is not only of interest because of its isolated phylogenetic location, but also because it is a human opportunistic pathogen with some strains of the species reported to cause lung infection, lethal meningitis, and necrotizing tenosynovitis. This is the first completed genome sequence of a member of the genus Tsukamurella and the first genome sequence of a member of the family Tsukamurellaceae. The 4,479,724 bp long genome contains a 99,806 bp long plasmid and a total of 4,335 protein-coding and 56 RNA genes, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Tsukamurella paurometabola corrig. (Steinhaus 1941) Collins et al. 1988 is the type species of the genus Tsukamurella, which is the type genus to the family Tsukamurellaceae. The species is not only of interest because of its isolated phylogenetic location, but also because it is a human opportunistic pathogen with some strains of the species reported to cause lung infection, lethal meningitis, and necrotizing tenosynovitis. This is the first completed genome sequence of a member of the genus Tsukamurella and the first genome sequence of a member of the family Tsukamurellaceae. The 4,479,724 bp long genome contains a 99,806 bp long plasmid and a total of 4,335 protein-coding and 56 RNA genes, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Chemoorganotrophic

KW - GEBA

KW - Gram-positive

KW - Mesophilic

KW - Metachromatic granules

KW - Non-motile

KW - Obligately aerobic

KW - Opportunistic pathogen

KW - Tsukamurellaceae

UR - http://www.scopus.com/inward/record.url?scp=80053345118&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=80053345118&partnerID=8YFLogxK

U2 - 10.4056/sigs.1894556

DO - 10.4056/sigs.1894556

M3 - Article

C2 - 21886861

AN - SCOPUS:80053345118

VL - 4

SP - 342

EP - 351

JO - Environmental Microbiomes

JF - Environmental Microbiomes

SN - 1944-3277

IS - 3

ER -

Access to Document

10.4056/sigs.1894556