Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P T)

Sam Pitluck, Montri Yasawong, Christine Munk, Matt Nolan, Alla Lapidus, Susan Lucas, Tijana Glavina del Rio, Hope Tice, Jan Fang Cheng, David Bruce, Chris Detter, Roxanne Tapia, Cliff Han, Lynne Goodwin, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy ChenKrishna Palaniappan, Miriam Land, Loren Hauser, Yun Juan Chang, Cynthia D. Jeffries, Manfred Rohde, Stefan Spring, Johannes Sikorski, Markus Göker, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk

Research output: Contribution to journalArticle

8 Citations (Scopus)

Abstract

Thermosediminibacter oceani (Lee et al. 2006) is the type species of the genus Thermosediminibacter in the family Thermoanaerobacteraceae. The anaerobic, barophilic, chemoorganotrophic thermophile is characterized by straight to curved Gram-negative rods. The strain described in this study was isolated from a core sample of deep sea sediments of the Peruvian high productivity upwelling system. This is the first completed genome sequence of a member of the genus Thermosediminibacter and the seventh genome sequence in the family Thermoanaerobacteraceae. The 2,280,035 bp long genome with its 2,285 protein-coding and 63 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)108-116
Number of pages9
JournalStandards in Genomic Sciences
Volume3
Issue number2
DOIs
StatePublished - 2010

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Genome
Encyclopedias
Archaea
Oceans and Seas
RNA
Bacteria
Genes
Proteins

Keywords

  • Anaerobe
  • Barophile
  • Chemoorganotroph
  • Core sample
  • Deep sea sediment
  • Firmicutes
  • GEBA
  • Thermoanaerobacterales
  • Thermophile
  • Upwelling system

ASJC Scopus subject areas

  • Genetics

Cite this

Pitluck, S., Yasawong, M., Munk, C., Nolan, M., Lapidus, A., Lucas, S., ... Klenk, H. P. (2010). Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P T). Standards in Genomic Sciences, 3(2), 108-116. https://doi.org/10.4056/sigs.1133078

Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P T). / Pitluck, Sam; Yasawong, Montri; Munk, Christine; Nolan, Matt; Lapidus, Alla; Lucas, Susan; del Rio, Tijana Glavina; Tice, Hope; Cheng, Jan Fang; Bruce, David; Detter, Chris; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Liolios, Konstantinos; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Rohde, Manfred; Spring, Stefan; Sikorski, Johannes; Göker, Markus; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

In: Standards in Genomic Sciences, Vol. 3, No. 2, 2010, p. 108-116.

Research output: Contribution to journalArticle

Pitluck, S, Yasawong, M, Munk, C, Nolan, M, Lapidus, A, Lucas, S, del Rio, TG, Tice, H, Cheng, JF, Bruce, D, Detter, C, Tapia, R, Han, C, Goodwin, L, Liolios, K, Ivanova, N, Mavromatis, K, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Rohde, M, Spring, S, Sikorski, J, Göker, M, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2010, 'Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P T)', Standards in Genomic Sciences, vol. 3, no. 2, pp. 108-116. https://doi.org/10.4056/sigs.1133078
Pitluck, Sam ; Yasawong, Montri ; Munk, Christine ; Nolan, Matt ; Lapidus, Alla ; Lucas, Susan ; del Rio, Tijana Glavina ; Tice, Hope ; Cheng, Jan Fang ; Bruce, David ; Detter, Chris ; Tapia, Roxanne ; Han, Cliff ; Goodwin, Lynne ; Liolios, Konstantinos ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Mikhailova, Natalia ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Rohde, Manfred ; Spring, Stefan ; Sikorski, Johannes ; Göker, Markus ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P T). In: Standards in Genomic Sciences. 2010 ; Vol. 3, No. 2. pp. 108-116.
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