Complete genome sequence of Thermobispora bispora type strain (R51 T)

Konstantinos Liolios, Johannes Sikorski, Marlen Jando, Alla Lapidus, Alex Copeland, Tijana Glavina del Rio, Matt Nolan, Susan Lucas, Hope Tice, Jan Fang Cheng, Cliff Han, Tanja Woyke, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Olga Chertkov, Cheryl Kuske, Amy ChenKrishna Palaniappan, Miriam Land, Loren Hauser, Yun Juan Chang, Cynthia D. Jeffries, John C. Detter, Thomas Brettin, Manfred Rohde, Markus Göker, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Hans Peter Klenk, Nikos C. Kyrpides

Research output: Contribution to journalArticle

17 Citations (Scopus)

Abstract

Thermobispora bispora (Henssen 1957) Wang et al. 1996 is the type species of the genus Thermobispora. This genus is of great interest because it is strictly thermophilic and because it has been shown for several of its members that the genome contains substantially distinct (6.4% sequence difference) and transcriptionally active 16S rRNA genes. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the second completed genome sequence of a member from the suborder Streptospo-rangineae and the first genome sequence of a member of the genus Thermobispora. The 4,189,976 bp long genome with its 3,596 protein-coding and 63 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)318-326
Number of pages9
JournalStandards in Genomic Sciences
Volume2
Issue number3
DOIs
StatePublished - 2010
Externally publishedYes

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Genome
Encyclopedias
Archaea
rRNA Genes
RNA
Bacteria
Genes
Proteins

Keywords

  • GEBA
  • Non-pathogenic
  • Streptospo-rangineae
  • Strictly thermophilic
  • Two distinct 16s rRNA genes

ASJC Scopus subject areas

  • Genetics

Cite this

Liolios, K., Sikorski, J., Jando, M., Lapidus, A., Copeland, A., del Rio, T. G., ... Kyrpides, N. C. (2010). Complete genome sequence of Thermobispora bispora type strain (R51 T). Standards in Genomic Sciences, 2(3), 318-326. https://doi.org/10.4056/sigs.962171

Complete genome sequence of Thermobispora bispora type strain (R51 T). / Liolios, Konstantinos; Sikorski, Johannes; Jando, Marlen; Lapidus, Alla; Copeland, Alex; del Rio, Tijana Glavina; Nolan, Matt; Lucas, Susan; Tice, Hope; Cheng, Jan Fang; Han, Cliff; Woyke, Tanja; Goodwin, Lynne; Pitluck, Sam; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Chertkov, Olga; Kuske, Cheryl; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Detter, John C.; Brettin, Thomas; Rohde, Manfred; Göker, Markus; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Klenk, Hans Peter; Kyrpides, Nikos C.

In: Standards in Genomic Sciences, Vol. 2, No. 3, 2010, p. 318-326.

Research output: Contribution to journalArticle

Liolios, K, Sikorski, J, Jando, M, Lapidus, A, Copeland, A, del Rio, TG, Nolan, M, Lucas, S, Tice, H, Cheng, JF, Han, C, Woyke, T, Goodwin, L, Pitluck, S, Ivanova, N, Mavromatis, K, Mikhailova, N, Chertkov, O, Kuske, C, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Detter, JC, Brettin, T, Rohde, M, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Klenk, HP & Kyrpides, NC 2010, 'Complete genome sequence of Thermobispora bispora type strain (R51 T)', Standards in Genomic Sciences, vol. 2, no. 3, pp. 318-326. https://doi.org/10.4056/sigs.962171
Liolios K, Sikorski J, Jando M, Lapidus A, Copeland A, del Rio TG et al. Complete genome sequence of Thermobispora bispora type strain (R51 T). Standards in Genomic Sciences. 2010;2(3):318-326. https://doi.org/10.4056/sigs.962171
Liolios, Konstantinos ; Sikorski, Johannes ; Jando, Marlen ; Lapidus, Alla ; Copeland, Alex ; del Rio, Tijana Glavina ; Nolan, Matt ; Lucas, Susan ; Tice, Hope ; Cheng, Jan Fang ; Han, Cliff ; Woyke, Tanja ; Goodwin, Lynne ; Pitluck, Sam ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Mikhailova, Natalia ; Chertkov, Olga ; Kuske, Cheryl ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Detter, John C. ; Brettin, Thomas ; Rohde, Manfred ; Göker, Markus ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Klenk, Hans Peter ; Kyrpides, Nikos C. / Complete genome sequence of Thermobispora bispora type strain (R51 T). In: Standards in Genomic Sciences. 2010 ; Vol. 2, No. 3. pp. 318-326.
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AU - Nolan, Matt

AU - Lucas, Susan

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AU - Cheng, Jan Fang

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AU - Brettin, Thomas

AU - Rohde, Manfred

AU - Göker, Markus

AU - Bristow, James

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AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Klenk, Hans Peter

AU - Kyrpides, Nikos C.

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