Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1 T)

Hajnalka Kiss, David Cleland, Alla Lapidus, Susan Lucas, Tijana Glavina del Rio, Matt Nolan, Hope Tice, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun Juan ChangCynthia D. Jeffries, Megan Lu, Thomas Brettin, John C. Detter, Markus Göker, Brian J. Tindall, Brian Beck, Timothy R. Mcdermott, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Jan Fang Cheng

Research output: Contribution to journalArticle

10 Citations (Scopus)

Abstract

'Thermobaculum terrenum' Botero et al. 2004 is the sole species within the proposed genus 'Thermobaculum'. Strain YNP1 T is the only cultivated member of an acid tolerant, extremely thermophilic species belonging to a phylogenetically isolated environmental clone group within the phylum Chloroflexi. At present, the name 'Thermobaculum terrenum' is not yet validly published as it contravenes Rule 30 (3a) of the Bacteriological Code. The bacterium was isolated from a slightly acidic extreme thermal soil in Yellowstone National Park, Wyoming (USA). Depending on its final taxonomic allocation, this is likely to be the third completed genome sequence of a member of the class Thermomicrobia and the seventh type strain genome from the phylum Chloroflexi. The 3,101,581 bp long genome with its 2,872 protein-coding and 58 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)153-162
Number of pages10
JournalStandards in Genomic Sciences
Volume3
Issue number2
DOIs
StatePublished - 2010

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Chloroflexi
Genome
Extreme Heat
Encyclopedias
Bacteria
Archaea
Names
Soil
Clone Cells
RNA
Acids
Genes
Proteins

Keywords

  • Chloroflexi
  • Extreme thermal soil
  • GEBA
  • Gram-positive
  • Incertae sedis
  • Non-sporeforming
  • Nonmotile
  • Obligate aerobe
  • Thermoacidophile

ASJC Scopus subject areas

  • Genetics

Cite this

Kiss, H., Cleland, D., Lapidus, A., Lucas, S., del Rio, T. G., Nolan, M., ... Cheng, J. F. (2010). Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1 T). Standards in Genomic Sciences, 3(2), 153-162. https://doi.org/10.4056/sigs.1153107

Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1 T). / Kiss, Hajnalka; Cleland, David; Lapidus, Alla; Lucas, Susan; del Rio, Tijana Glavina; Nolan, Matt; Tice, Hope; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Ivanova, Natalia; Mavromatis, Konstantinos; Ovchinnikova, Galina; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Lu, Megan; Brettin, Thomas; Detter, John C.; Göker, Markus; Tindall, Brian J.; Beck, Brian; Mcdermott, Timothy R.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Cheng, Jan Fang.

In: Standards in Genomic Sciences, Vol. 3, No. 2, 2010, p. 153-162.

Research output: Contribution to journalArticle

Kiss, H, Cleland, D, Lapidus, A, Lucas, S, del Rio, TG, Nolan, M, Tice, H, Han, C, Goodwin, L, Pitluck, S, Liolios, K, Ivanova, N, Mavromatis, K, Ovchinnikova, G, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Lu, M, Brettin, T, Detter, JC, Göker, M, Tindall, BJ, Beck, B, Mcdermott, TR, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Cheng, JF 2010, 'Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1 T)', Standards in Genomic Sciences, vol. 3, no. 2, pp. 153-162. https://doi.org/10.4056/sigs.1153107
Kiss, Hajnalka ; Cleland, David ; Lapidus, Alla ; Lucas, Susan ; del Rio, Tijana Glavina ; Nolan, Matt ; Tice, Hope ; Han, Cliff ; Goodwin, Lynne ; Pitluck, Sam ; Liolios, Konstantinos ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Ovchinnikova, Galina ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Lu, Megan ; Brettin, Thomas ; Detter, John C. ; Göker, Markus ; Tindall, Brian J. ; Beck, Brian ; Mcdermott, Timothy R. ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Cheng, Jan Fang. / Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1 T). In: Standards in Genomic Sciences. 2010 ; Vol. 3, No. 2. pp. 153-162.
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AU - Han, Cliff

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AU - Pitluck, Sam

AU - Liolios, Konstantinos

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AU - Bristow, James

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AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

AU - Cheng, Jan Fang

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