Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883 T)

Mansi Chovatia, Johannes Sikorski, Maren Schröder, Alla Lapidus, Matt Nolan, Hope Tice, Tijana Glavina del Rio, Alex Copeland, Jan Fang Cheng, Susan Lucas, Feng Chen, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova, Amrita Pati, Amy Chen, Krishna PalaniappanMiriam Land, Loren Hauser, Yun Juan Chang, Cynthia D. Jeffries, Patrick Chain, Elizabeth Saunders, John C. Detter, Thomas Brettin, Manfred Rohde, Markus Göker, Stefan Spring, Jim Bristow, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Jonathan A Eisen

Research output: Contribution to journalArticle

16 Citations (Scopus)

Abstract

Thermanaerovibrio acidaminovorans (Guangsheng et al. 1997) Baena et al. 1999 is the type species of the genus Thermanaerovibrio and is of phylogenetic interest because of the very isolated location of the novel phylum Synergistetes. T. acidaminovorans Su883 T is a Gram-negative, motile, non-spore-forming bacterium isolated from an anaerobic reactor of a sugar refinery in The Netherlands. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first completed genome sequence from a member of the phylum Synergistetes. The 1,848,474 bp long single replicon genome with its 1765 protein-coding and 60 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)254-261
Number of pages8
JournalStandards in Genomic Sciences
Volume1
Issue number3
DOIs
StatePublished - 2009

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Genome
Encyclopedias
Replicon
Anaerobic Bacteria
Archaea
Netherlands
RNA
Bacteria
Genes
Proteins

Keywords

  • Amino acid fermentation
  • Co-culture with methanobacterium thermoautotrophicum
  • Lithotrophic
  • Oxidative decarboxylation
  • Strictly anaerobic
  • Synergistales
  • Synergistetes
  • Thermophile

ASJC Scopus subject areas

  • Genetics

Cite this

Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883 T). / Chovatia, Mansi; Sikorski, Johannes; Schröder, Maren; Lapidus, Alla; Nolan, Matt; Tice, Hope; del Rio, Tijana Glavina; Copeland, Alex; Cheng, Jan Fang; Lucas, Susan; Chen, Feng; Bruce, David; Goodwin, Lynne; Pitluck, Sam; Ivanova, Natalia; Mavromatis, Konstantinos; Ovchinnikova, Galina; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Chain, Patrick; Saunders, Elizabeth; Detter, John C.; Brettin, Thomas; Rohde, Manfred; Göker, Markus; Spring, Stefan; Bristow, Jim; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Eisen, Jonathan A.

In: Standards in Genomic Sciences, Vol. 1, No. 3, 2009, p. 254-261.

Research output: Contribution to journalArticle

Chovatia, M, Sikorski, J, Schröder, M, Lapidus, A, Nolan, M, Tice, H, del Rio, TG, Copeland, A, Cheng, JF, Lucas, S, Chen, F, Bruce, D, Goodwin, L, Pitluck, S, Ivanova, N, Mavromatis, K, Ovchinnikova, G, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Chain, P, Saunders, E, Detter, JC, Brettin, T, Rohde, M, Göker, M, Spring, S, Bristow, J, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Eisen, JA 2009, 'Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883 T)', Standards in Genomic Sciences, vol. 1, no. 3, pp. 254-261. https://doi.org/10.4056/sigs.40645
Chovatia, Mansi ; Sikorski, Johannes ; Schröder, Maren ; Lapidus, Alla ; Nolan, Matt ; Tice, Hope ; del Rio, Tijana Glavina ; Copeland, Alex ; Cheng, Jan Fang ; Lucas, Susan ; Chen, Feng ; Bruce, David ; Goodwin, Lynne ; Pitluck, Sam ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Ovchinnikova, Galina ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Chain, Patrick ; Saunders, Elizabeth ; Detter, John C. ; Brettin, Thomas ; Rohde, Manfred ; Göker, Markus ; Spring, Stefan ; Bristow, Jim ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Eisen, Jonathan A. / Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883 T). In: Standards in Genomic Sciences. 2009 ; Vol. 1, No. 3. pp. 254-261.
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AU - Lapidus, Alla

AU - Nolan, Matt

AU - Tice, Hope

AU - del Rio, Tijana Glavina

AU - Copeland, Alex

AU - Cheng, Jan Fang

AU - Lucas, Susan

AU - Chen, Feng

AU - Bruce, David

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Ivanova, Natalia

AU - Mavromatis, Konstantinos

AU - Ovchinnikova, Galina

AU - Pati, Amrita

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AU - Palaniappan, Krishna

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AU - Hauser, Loren

AU - Chang, Yun Juan

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AU - Rohde, Manfred

AU - Göker, Markus

AU - Spring, Stefan

AU - Bristow, Jim

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

AU - Eisen, Jonathan A

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