Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812T)

Iain Anderson; Elizabeth Saunders; Alla Lapidus; Matt Nolan; Susan Lucas; Hope Tice; Tijana Glavina Del Rio; Jan Fang Cheng; Cliff Han; Roxanne Tapia; Lynne A. Goodwin; Sam Pitluck; Konstantinos Liolios; Konstantinos Mavromatis; Ioanna Pagani; Natalia Ivanova; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Cynthia D. Jeffries; Yun Juan Chang; Evelyne Marie Brambilla; Manfred Rohde; Stefan Spring; Markus Göker; John C. Detter; Tanja Woyke; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C. Kyrpides; Hans Peter Klenk

doi:10.4056/sigs.2665915

Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812^T)

Iain Anderson, Elizabeth Saunders, Alla Lapidus, Matt Nolan, Susan Lucas, Hope Tice, Tijana Glavina Del Rio, Jan Fang Cheng, Cliff Han, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Konstantinos Mavromatis, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna PalaniappanMiriam Land, Loren Hauser, Cynthia D. Jeffries, Yun Juan Chang, Evelyne Marie Brambilla, Manfred Rohde, Stefan Spring, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk

Medical Microbiology and Immunology

Research output: Contribution to journal › Article › peer-review

9 Scopus citations

Abstract

Thermodesulfatator indicus Moussard et al. 2004 is a member of the Thermodesulfobacteriaceae, a family in the phylum Thermodesulfobacteria that is currently poorly characterized at the genome level. Members of this phylum are of interest because they represent a distinct, deep-branching, Gram-negative lineage. T. indicus is an anaerobic, thermophilic, chemolithoautotrophic sulfate reducer isolated from a deep-sea hydrothermal vent. Here we describe the features of this organism, together with the complete genome sequence, and annotation. The 2,322,224 bp long chromosome with its 2,233 protein-coding and 58 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original language	English (US)
Pages (from-to)	155-164
Number of pages	10
Journal	Standards in Genomic Sciences
Volume	6
Issue number	2
DOIs	https://doi.org/10.4056/sigs.2665915
State	Published - 2012

Keywords

Black smoker
Chemolithoautotrophic
GEBA
Gram-negative
Motile
Strictly anaerobic
Sulfate-reducing
Thermodesulfobacteria
Thermodesulfobacteriaceae
Thermophilic

ASJC Scopus subject areas

Genetics

Access to Document

10.4056/sigs.2665915

Cite this

Anderson, I., Saunders, E., Lapidus, A., Nolan, M., Lucas, S., Tice, H., Del Rio, T. G., Cheng, J. F., Han, C., Tapia, R., Goodwin, L. A., Pitluck, S., Liolios, K., Mavromatis, K., Pagani, I., Ivanova, N., Mikhailova, N., Pati, A., Chen, A., ... Klenk, H. P. (2012). Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812^T). Standards in Genomic Sciences, 6(2), 155-164. https://doi.org/10.4056/sigs.2665915

Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812^T). / Anderson, Iain; Saunders, Elizabeth; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Tice, Hope; Del Rio, Tijana Glavina; Cheng, Jan Fang; Han, Cliff; Tapia, Roxanne; Goodwin, Lynne A.; Pitluck, Sam; Liolios, Konstantinos; Mavromatis, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Jeffries, Cynthia D.; Chang, Yun Juan; Brambilla, Evelyne Marie; Rohde, Manfred; Spring, Stefan; Göker, Markus; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

In: Standards in Genomic Sciences, Vol. 6, No. 2, 2012, p. 155-164.

Research output: Contribution to journal › Article › peer-review

Anderson, I, Saunders, E, Lapidus, A, Nolan, M, Lucas, S, Tice, H, Del Rio, TG, Cheng, JF, Han, C, Tapia, R, Goodwin, LA, Pitluck, S, Liolios, K, Mavromatis, K, Pagani, I, Ivanova, N, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Jeffries, CD, Chang, YJ, Brambilla, EM, Rohde, M, Spring, S, Göker, M, Detter, JC, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2012, 'Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812^T)', Standards in Genomic Sciences, vol. 6, no. 2, pp. 155-164. https://doi.org/10.4056/sigs.2665915

Anderson, Iain ; Saunders, Elizabeth ; Lapidus, Alla ; Nolan, Matt ; Lucas, Susan ; Tice, Hope ; Del Rio, Tijana Glavina ; Cheng, Jan Fang ; Han, Cliff ; Tapia, Roxanne ; Goodwin, Lynne A. ; Pitluck, Sam ; Liolios, Konstantinos ; Mavromatis, Konstantinos ; Pagani, Ioanna ; Ivanova, Natalia ; Mikhailova, Natalia ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Jeffries, Cynthia D. ; Chang, Yun Juan ; Brambilla, Evelyne Marie ; Rohde, Manfred ; Spring, Stefan ; Göker, Markus ; Detter, John C. ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812^T). In: Standards in Genomic Sciences. 2012 ; Vol. 6, No. 2. pp. 155-164.

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