Abstract
Thermodesulfatator indicus Moussard et al. 2004 is a member of the Thermodesulfobacteriaceae, a family in the phylum Thermodesulfobacteria that is currently poorly characterized at the genome level. Members of this phylum are of interest because they represent a distinct, deep-branching, Gram-negative lineage. T. indicus is an anaerobic, thermophilic, chemolithoautotrophic sulfate reducer isolated from a deep-sea hydrothermal vent. Here we describe the features of this organism, together with the complete genome sequence, and annotation. The 2,322,224 bp long chromosome with its 2,233 protein-coding and 58 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
| Original language | English (US) |
|---|---|
| Pages (from-to) | 155-164 |
| Number of pages | 10 |
| Journal | Standards in Genomic Sciences |
| Volume | 6 |
| Issue number | 2 |
| DOIs | |
| State | Published - 2012 |
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Keywords
- Black smoker
- Chemolithoautotrophic
- GEBA
- Gram-negative
- Motile
- Strictly anaerobic
- Sulfate-reducing
- Thermodesulfobacteria
- Thermodesulfobacteriaceae
- Thermophilic
ASJC Scopus subject areas
- Genetics
Cite this
Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812T). / Anderson, Iain; Saunders, Elizabeth; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Tice, Hope; Del Rio, Tijana Glavina; Cheng, Jan Fang; Han, Cliff; Tapia, Roxanne; Goodwin, Lynne A.; Pitluck, Sam; Liolios, Konstantinos; Mavromatis, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Jeffries, Cynthia D.; Chang, Yun Juan; Brambilla, Evelyne Marie; Rohde, Manfred; Spring, Stefan; Göker, Markus; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.
In: Standards in Genomic Sciences, Vol. 6, No. 2, 2012, p. 155-164.Research output: Contribution to journal › Article
}
TY - JOUR
T1 - Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812T)
AU - Anderson, Iain
AU - Saunders, Elizabeth
AU - Lapidus, Alla
AU - Nolan, Matt
AU - Lucas, Susan
AU - Tice, Hope
AU - Del Rio, Tijana Glavina
AU - Cheng, Jan Fang
AU - Han, Cliff
AU - Tapia, Roxanne
AU - Goodwin, Lynne A.
AU - Pitluck, Sam
AU - Liolios, Konstantinos
AU - Mavromatis, Konstantinos
AU - Pagani, Ioanna
AU - Ivanova, Natalia
AU - Mikhailova, Natalia
AU - Pati, Amrita
AU - Chen, Amy
AU - Palaniappan, Krishna
AU - Land, Miriam
AU - Hauser, Loren
AU - Jeffries, Cynthia D.
AU - Chang, Yun Juan
AU - Brambilla, Evelyne Marie
AU - Rohde, Manfred
AU - Spring, Stefan
AU - Göker, Markus
AU - Detter, John C.
AU - Woyke, Tanja
AU - Bristow, James
AU - Eisen, Jonathan A
AU - Markowitz, Victor
AU - Hugenholtz, Philip
AU - Kyrpides, Nikos C.
AU - Klenk, Hans Peter
PY - 2012
Y1 - 2012
N2 - Thermodesulfatator indicus Moussard et al. 2004 is a member of the Thermodesulfobacteriaceae, a family in the phylum Thermodesulfobacteria that is currently poorly characterized at the genome level. Members of this phylum are of interest because they represent a distinct, deep-branching, Gram-negative lineage. T. indicus is an anaerobic, thermophilic, chemolithoautotrophic sulfate reducer isolated from a deep-sea hydrothermal vent. Here we describe the features of this organism, together with the complete genome sequence, and annotation. The 2,322,224 bp long chromosome with its 2,233 protein-coding and 58 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
AB - Thermodesulfatator indicus Moussard et al. 2004 is a member of the Thermodesulfobacteriaceae, a family in the phylum Thermodesulfobacteria that is currently poorly characterized at the genome level. Members of this phylum are of interest because they represent a distinct, deep-branching, Gram-negative lineage. T. indicus is an anaerobic, thermophilic, chemolithoautotrophic sulfate reducer isolated from a deep-sea hydrothermal vent. Here we describe the features of this organism, together with the complete genome sequence, and annotation. The 2,322,224 bp long chromosome with its 2,233 protein-coding and 58 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
KW - Black smoker
KW - Chemolithoautotrophic
KW - GEBA
KW - Gram-negative
KW - Motile
KW - Strictly anaerobic
KW - Sulfate-reducing
KW - Thermodesulfobacteria
KW - Thermodesulfobacteriaceae
KW - Thermophilic
UR - http://www.scopus.com/inward/record.url?scp=84863575494&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84863575494&partnerID=8YFLogxK
U2 - 10.4056/sigs.2665915
DO - 10.4056/sigs.2665915
M3 - Article
C2 - 22768359
AN - SCOPUS:84863575494
VL - 6
SP - 155
EP - 164
JO - Environmental Microbiomes
JF - Environmental Microbiomes
SN - 1944-3277
IS - 2
ER -