Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812T)

Iain Anderson; Elizabeth Saunders; Alla Lapidus; Matt Nolan; Susan Lucas; Hope Tice; Tijana Glavina Del Rio; Jan Fang Cheng; Cliff Han; Roxanne Tapia; Lynne A. Goodwin; Sam Pitluck; Konstantinos Liolios; Konstantinos Mavromatis; Ioanna Pagani; Natalia Ivanova; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Cynthia D. Jeffries; Yun Juan Chang; Evelyne Marie Brambilla; Manfred Rohde; Stefan Spring; Markus Göker; John C. Detter; Tanja Woyke; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C. Kyrpides; Hans Peter Klenk

doi:10.4056/sigs.2665915

Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812^T)

Iain Anderson, Elizabeth Saunders, Alla Lapidus, Matt Nolan, Susan Lucas, Hope Tice, Tijana Glavina Del Rio, Jan Fang Cheng, Cliff Han, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Konstantinos Mavromatis, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna PalaniappanMiriam Land, Loren Hauser, Cynthia D. Jeffries, Yun Juan Chang, Evelyne Marie Brambilla, Manfred Rohde, Stefan Spring, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk

Medical Microbiology and Immunology

Research output: Contribution to journal › Article

9 Scopus citations

Abstract

Thermodesulfatator indicus Moussard et al. 2004 is a member of the Thermodesulfobacteriaceae, a family in the phylum Thermodesulfobacteria that is currently poorly characterized at the genome level. Members of this phylum are of interest because they represent a distinct, deep-branching, Gram-negative lineage. T. indicus is an anaerobic, thermophilic, chemolithoautotrophic sulfate reducer isolated from a deep-sea hydrothermal vent. Here we describe the features of this organism, together with the complete genome sequence, and annotation. The 2,322,224 bp long chromosome with its 2,233 protein-coding and 58 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original language	English (US)
Pages (from-to)	155-164
Number of pages	10
Journal	Standards in Genomic Sciences
Volume	6
Issue number	2
DOIs	https://doi.org/10.4056/sigs.2665915
State	Published - 2012

Fingerprint

Keywords

Black smoker
Chemolithoautotrophic
GEBA
Gram-negative
Motile
Strictly anaerobic
Sulfate-reducing
Thermodesulfobacteria
Thermodesulfobacteriaceae
Thermophilic

ASJC Scopus subject areas

Genetics

Cite this

Anderson, I., Saunders, E., Lapidus, A., Nolan, M., Lucas, S., Tice, H., Del Rio, T. G., Cheng, J. F., Han, C., Tapia, R., Goodwin, L. A., Pitluck, S., Liolios, K., Mavromatis, K., Pagani, I., Ivanova, N., Mikhailova, N., Pati, A., Chen, A., ... Klenk, H. P. (2012). Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812^T). Standards in Genomic Sciences, 6(2), 155-164. https://doi.org/10.4056/sigs.2665915

Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812^T). / Anderson, Iain; Saunders, Elizabeth; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Tice, Hope; Del Rio, Tijana Glavina; Cheng, Jan Fang; Han, Cliff; Tapia, Roxanne; Goodwin, Lynne A.; Pitluck, Sam; Liolios, Konstantinos; Mavromatis, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Jeffries, Cynthia D.; Chang, Yun Juan; Brambilla, Evelyne Marie; Rohde, Manfred; Spring, Stefan; Göker, Markus; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

In: Standards in Genomic Sciences, Vol. 6, No. 2, 2012, p. 155-164.

Research output: Contribution to journal › Article

Anderson, I, Saunders, E, Lapidus, A, Nolan, M, Lucas, S, Tice, H, Del Rio, TG, Cheng, JF, Han, C, Tapia, R, Goodwin, LA, Pitluck, S, Liolios, K, Mavromatis, K, Pagani, I, Ivanova, N, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Jeffries, CD, Chang, YJ, Brambilla, EM, Rohde, M, Spring, S, Göker, M, Detter, JC, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2012, 'Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812^T)', Standards in Genomic Sciences, vol. 6, no. 2, pp. 155-164. https://doi.org/10.4056/sigs.2665915

Anderson, Iain ; Saunders, Elizabeth ; Lapidus, Alla ; Nolan, Matt ; Lucas, Susan ; Tice, Hope ; Del Rio, Tijana Glavina ; Cheng, Jan Fang ; Han, Cliff ; Tapia, Roxanne ; Goodwin, Lynne A. ; Pitluck, Sam ; Liolios, Konstantinos ; Mavromatis, Konstantinos ; Pagani, Ioanna ; Ivanova, Natalia ; Mikhailova, Natalia ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Jeffries, Cynthia D. ; Chang, Yun Juan ; Brambilla, Evelyne Marie ; Rohde, Manfred ; Spring, Stefan ; Göker, Markus ; Detter, John C. ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812^T). In: Standards in Genomic Sciences. 2012 ; Vol. 6, No. 2. pp. 155-164.

@article{75d4d693b1db480abfd392d160e13743,

title = "Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812T)",

abstract = "Thermodesulfatator indicus Moussard et al. 2004 is a member of the Thermodesulfobacteriaceae, a family in the phylum Thermodesulfobacteria that is currently poorly characterized at the genome level. Members of this phylum are of interest because they represent a distinct, deep-branching, Gram-negative lineage. T. indicus is an anaerobic, thermophilic, chemolithoautotrophic sulfate reducer isolated from a deep-sea hydrothermal vent. Here we describe the features of this organism, together with the complete genome sequence, and annotation. The 2,322,224 bp long chromosome with its 2,233 protein-coding and 58 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.",

keywords = "Black smoker, Chemolithoautotrophic, GEBA, Gram-negative, Motile, Strictly anaerobic, Sulfate-reducing, Thermodesulfobacteria, Thermodesulfobacteriaceae, Thermophilic",

author = "Iain Anderson and Elizabeth Saunders and Alla Lapidus and Matt Nolan and Susan Lucas and Hope Tice and {Del Rio}, {Tijana Glavina} and Cheng, {Jan Fang} and Cliff Han and Roxanne Tapia and Goodwin, {Lynne A.} and Sam Pitluck and Konstantinos Liolios and Konstantinos Mavromatis and Ioanna Pagani and Natalia Ivanova and Natalia Mikhailova and Amrita Pati and Amy Chen and Krishna Palaniappan and Miriam Land and Loren Hauser and Jeffries, {Cynthia D.} and Chang, {Yun Juan} and Brambilla, {Evelyne Marie} and Manfred Rohde and Stefan Spring and Markus G{\"o}ker and Detter, {John C.} and Tanja Woyke and James Bristow and Eisen, {Jonathan A} and Victor Markowitz and Philip Hugenholtz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter}",

year = "2012",

doi = "10.4056/sigs.2665915",

language = "English (US)",

volume = "6",

pages = "155--164",

journal = "Environmental Microbiomes",

issn = "1944-3277",

publisher = "BioMed Central Ltd.",

number = "2",

}

TY - JOUR

T1 - Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812T)

AU - Anderson, Iain

AU - Saunders, Elizabeth

AU - Lapidus, Alla

AU - Nolan, Matt

AU - Lucas, Susan

AU - Tice, Hope

AU - Del Rio, Tijana Glavina

AU - Cheng, Jan Fang

AU - Han, Cliff

AU - Tapia, Roxanne

AU - Goodwin, Lynne A.

AU - Pitluck, Sam

AU - Liolios, Konstantinos

AU - Mavromatis, Konstantinos

AU - Pagani, Ioanna

AU - Ivanova, Natalia

AU - Mikhailova, Natalia

AU - Pati, Amrita

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Jeffries, Cynthia D.

AU - Chang, Yun Juan

AU - Brambilla, Evelyne Marie

AU - Rohde, Manfred

AU - Spring, Stefan

AU - Göker, Markus

AU - Detter, John C.

AU - Woyke, Tanja

AU - Bristow, James

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

PY - 2012

Y1 - 2012

N2 - Thermodesulfatator indicus Moussard et al. 2004 is a member of the Thermodesulfobacteriaceae, a family in the phylum Thermodesulfobacteria that is currently poorly characterized at the genome level. Members of this phylum are of interest because they represent a distinct, deep-branching, Gram-negative lineage. T. indicus is an anaerobic, thermophilic, chemolithoautotrophic sulfate reducer isolated from a deep-sea hydrothermal vent. Here we describe the features of this organism, together with the complete genome sequence, and annotation. The 2,322,224 bp long chromosome with its 2,233 protein-coding and 58 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Thermodesulfatator indicus Moussard et al. 2004 is a member of the Thermodesulfobacteriaceae, a family in the phylum Thermodesulfobacteria that is currently poorly characterized at the genome level. Members of this phylum are of interest because they represent a distinct, deep-branching, Gram-negative lineage. T. indicus is an anaerobic, thermophilic, chemolithoautotrophic sulfate reducer isolated from a deep-sea hydrothermal vent. Here we describe the features of this organism, together with the complete genome sequence, and annotation. The 2,322,224 bp long chromosome with its 2,233 protein-coding and 58 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Black smoker

KW - Chemolithoautotrophic

KW - GEBA

KW - Gram-negative

KW - Motile

KW - Strictly anaerobic

KW - Sulfate-reducing

KW - Thermodesulfobacteria

KW - Thermodesulfobacteriaceae

KW - Thermophilic

UR - http://www.scopus.com/inward/record.url?scp=84863575494&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=84863575494&partnerID=8YFLogxK

U2 - 10.4056/sigs.2665915

DO - 10.4056/sigs.2665915

M3 - Article

C2 - 22768359

AN - SCOPUS:84863575494

VL - 6

SP - 155

EP - 164

JO - Environmental Microbiomes

JF - Environmental Microbiomes

SN - 1944-3277

IS - 2

ER -

Access to Document

10.4056/sigs.2665915