Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A T)

Iain Anderson, Markus Göker, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Marcel Huntemann, Konstantinos Liolios, Natalia Ivanova, Ioanna Pagani, Konstantinos Mavromatis, Galina Ovchinikova, Amrita Pati, Amy Chen, Krishna Pala-NiappanMiriam Land, Loren Hauser, Evelyne Marie Brambilla, Harald Huber, Montri Yasawong, Manfred Rohde, Stefan Spring, Birte Abt, Johannes Sikorski, Reinhard Wirth, John C. Detter, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Alla Lapidus

Research output: Contribution to journalArticle

8 Citations (Scopus)

Abstract

Pyrolobus fumarii Blöchl et al. 1997 is the type species of the genus Pyrolobus, which belongs to the crenarchaeal family Pyrodictiaceae. The species is a facultatively microaerophilic non-motile crenarchaeon. It is of interest because of its isolated phylogenetic location in the tree of life and because it is a hyperthermophilic chemolithoautotroph known as the primary producer of organic matter at deep-sea hydrothermal vents. P. fumarii exhibits currently the highest optimal growth temperature of all life forms on earth (106°C). This is the first completed genome sequence of a member of the genus Pyrolobus to be published and only the second genome sequence from a member of the family Pyrodictiaceae. Although Diversa Corporation announced the completion of sequencing of the P. fumarii genome on September 25, 2001, this sequence was never released to the public. The 1,843,267 bp long genome with its 1,986 protein-coding and 52 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)381-392
Number of pages12
JournalStandards in Genomic Sciences
Volume4
Issue number3
DOIs
StatePublished - 2011

Fingerprint

Pyrodictiaceae
Genome
Hydrothermal Vents
Encyclopedias
Archaea
RNA
Bacteria
Temperature
Growth

Keywords

  • Black smoker
  • Chemolithoautotroph
  • Facultative microaerophilic
  • GEBA
  • Hydrothermal solfataric vents
  • Hyperthermophile
  • Non-motile
  • Pyrodictiaceae

ASJC Scopus subject areas

  • Genetics

Cite this

Anderson, I., Göker, M., Nolan, M., Lucas, S., Hammon, N., Deshpande, S., ... Lapidus, A. (2011). Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A T). Standards in Genomic Sciences, 4(3), 381-392. https://doi.org/10.4056/sigs.2014648

Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A T). / Anderson, Iain; Göker, Markus; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan Fang; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Huntemann, Marcel; Liolios, Konstantinos; Ivanova, Natalia; Pagani, Ioanna; Mavromatis, Konstantinos; Ovchinikova, Galina; Pati, Amrita; Chen, Amy; Pala-Niappan, Krishna; Land, Miriam; Hauser, Loren; Brambilla, Evelyne Marie; Huber, Harald; Yasawong, Montri; Rohde, Manfred; Spring, Stefan; Abt, Birte; Sikorski, Johannes; Wirth, Reinhard; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Lapidus, Alla.

In: Standards in Genomic Sciences, Vol. 4, No. 3, 2011, p. 381-392.

Research output: Contribution to journalArticle

Anderson, I, Göker, M, Nolan, M, Lucas, S, Hammon, N, Deshpande, S, Cheng, JF, Tapia, R, Han, C, Goodwin, L, Pitluck, S, Huntemann, M, Liolios, K, Ivanova, N, Pagani, I, Mavromatis, K, Ovchinikova, G, Pati, A, Chen, A, Pala-Niappan, K, Land, M, Hauser, L, Brambilla, EM, Huber, H, Yasawong, M, Rohde, M, Spring, S, Abt, B, Sikorski, J, Wirth, R, Detter, JC, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Lapidus, A 2011, 'Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A T)', Standards in Genomic Sciences, vol. 4, no. 3, pp. 381-392. https://doi.org/10.4056/sigs.2014648
Anderson, Iain ; Göker, Markus ; Nolan, Matt ; Lucas, Susan ; Hammon, Nancy ; Deshpande, Shweta ; Cheng, Jan Fang ; Tapia, Roxanne ; Han, Cliff ; Goodwin, Lynne ; Pitluck, Sam ; Huntemann, Marcel ; Liolios, Konstantinos ; Ivanova, Natalia ; Pagani, Ioanna ; Mavromatis, Konstantinos ; Ovchinikova, Galina ; Pati, Amrita ; Chen, Amy ; Pala-Niappan, Krishna ; Land, Miriam ; Hauser, Loren ; Brambilla, Evelyne Marie ; Huber, Harald ; Yasawong, Montri ; Rohde, Manfred ; Spring, Stefan ; Abt, Birte ; Sikorski, Johannes ; Wirth, Reinhard ; Detter, John C. ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Lapidus, Alla. / Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A T). In: Standards in Genomic Sciences. 2011 ; Vol. 4, No. 3. pp. 381-392.
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AU - Lucas, Susan

AU - Hammon, Nancy

AU - Deshpande, Shweta

AU - Cheng, Jan Fang

AU - Tapia, Roxanne

AU - Han, Cliff

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Huntemann, Marcel

AU - Liolios, Konstantinos

AU - Ivanova, Natalia

AU - Pagani, Ioanna

AU - Mavromatis, Konstantinos

AU - Ovchinikova, Galina

AU - Pati, Amrita

AU - Chen, Amy

AU - Pala-Niappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Brambilla, Evelyne Marie

AU - Huber, Harald

AU - Yasawong, Montri

AU - Rohde, Manfred

AU - Spring, Stefan

AU - Abt, Birte

AU - Sikorski, Johannes

AU - Wirth, Reinhard

AU - Detter, John C.

AU - Woyke, Tanja

AU - Bristow, James

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

AU - Lapidus, Alla

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