Complete genome sequence of the gliding, heparinolytic pedobacter saltans type strain (113 T)

Konstantinos Liolios, Johannes Sikorski, Meagan Lu, Matt Nolan, Alla Lapidus, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Marcel Huntemann, Natalia Ivanova, Ioanna Pagani, Konstantinos Mavromatis, Galina Ovchinikova, Amrita Pati, Amy ChenKrishna Palaniappan, Miriam Land, Loren Hauser, Evelyne Marie Brambilla, Oleg Kotsyurbenko, Manfred Rohde, Brian J. Tindall, Birte Abt, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Hans Peter Klenk, Nikos C. Kyrpides

Research output: Contribution to journalArticle

9 Citations (Scopus)

Abstract

Pedobacter saltans Steyn et al. 1998 is one of currently 32 species in the genus Pedobacter within the family Sphingobacteriaceae. The species is of interest for its isolated location in the tree of life. Like other members of the genus P. saltans is heparinolytic. Cells of P. saltans show a peculiar gliding, dancing motility and can be distinguished from other Pedobacter strains by their ability to utilize glycerol and the inability to assimilate D-cellobiose. The genome presented here is only the second completed genome sequence of a type strain from a member of the family Sphingobacteriaceae to be published. The 4,635,236 bp long genome with its 3,854 protein-coding and 67 RNA genes consists of one chromosome, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)30-40
Number of pages11
JournalStandards in Genomic Sciences
Volume5
Issue number1
DOIs
StatePublished - 2011

Fingerprint

Pedobacter
Genome
Encyclopedias
Cellobiose
Aptitude
Archaea
Glycerol
Chromosomes
RNA
Bacteria
Genes
Proteins

Keywords

  • Chemoorganotrophic
  • GEBA
  • Gliding motility
  • Gram-negative
  • Heparinolytic
  • Mesophilic
  • Sphingobacteriaceae
  • Strictly aerobic

ASJC Scopus subject areas

  • Genetics

Cite this

Liolios, K., Sikorski, J., Lu, M., Nolan, M., Lapidus, A., Lucas, S., ... Kyrpides, N. C. (2011). Complete genome sequence of the gliding, heparinolytic pedobacter saltans type strain (113 T). Standards in Genomic Sciences, 5(1), 30-40. https://doi.org/10.4056/sigs.2154937

Complete genome sequence of the gliding, heparinolytic pedobacter saltans type strain (113 T). / Liolios, Konstantinos; Sikorski, Johannes; Lu, Meagan; Nolan, Matt; Lapidus, Alla; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan Fang; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Huntemann, Marcel; Ivanova, Natalia; Pagani, Ioanna; Mavromatis, Konstantinos; Ovchinikova, Galina; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Brambilla, Evelyne Marie; Kotsyurbenko, Oleg; Rohde, Manfred; Tindall, Brian J.; Abt, Birte; Göker, Markus; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Klenk, Hans Peter; Kyrpides, Nikos C.

In: Standards in Genomic Sciences, Vol. 5, No. 1, 2011, p. 30-40.

Research output: Contribution to journalArticle

Liolios, K, Sikorski, J, Lu, M, Nolan, M, Lapidus, A, Lucas, S, Hammon, N, Deshpande, S, Cheng, JF, Tapia, R, Han, C, Goodwin, L, Pitluck, S, Huntemann, M, Ivanova, N, Pagani, I, Mavromatis, K, Ovchinikova, G, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Brambilla, EM, Kotsyurbenko, O, Rohde, M, Tindall, BJ, Abt, B, Göker, M, Detter, JC, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Klenk, HP & Kyrpides, NC 2011, 'Complete genome sequence of the gliding, heparinolytic pedobacter saltans type strain (113 T)', Standards in Genomic Sciences, vol. 5, no. 1, pp. 30-40. https://doi.org/10.4056/sigs.2154937
Liolios, Konstantinos ; Sikorski, Johannes ; Lu, Meagan ; Nolan, Matt ; Lapidus, Alla ; Lucas, Susan ; Hammon, Nancy ; Deshpande, Shweta ; Cheng, Jan Fang ; Tapia, Roxanne ; Han, Cliff ; Goodwin, Lynne ; Pitluck, Sam ; Huntemann, Marcel ; Ivanova, Natalia ; Pagani, Ioanna ; Mavromatis, Konstantinos ; Ovchinikova, Galina ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Brambilla, Evelyne Marie ; Kotsyurbenko, Oleg ; Rohde, Manfred ; Tindall, Brian J. ; Abt, Birte ; Göker, Markus ; Detter, John C. ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Klenk, Hans Peter ; Kyrpides, Nikos C. / Complete genome sequence of the gliding, heparinolytic pedobacter saltans type strain (113 T). In: Standards in Genomic Sciences. 2011 ; Vol. 5, No. 1. pp. 30-40.
@article{e2d8be9f70534ad38d444a9a3455df17,
title = "Complete genome sequence of the gliding, heparinolytic pedobacter saltans type strain (113 T)",
abstract = "Pedobacter saltans Steyn et al. 1998 is one of currently 32 species in the genus Pedobacter within the family Sphingobacteriaceae. The species is of interest for its isolated location in the tree of life. Like other members of the genus P. saltans is heparinolytic. Cells of P. saltans show a peculiar gliding, dancing motility and can be distinguished from other Pedobacter strains by their ability to utilize glycerol and the inability to assimilate D-cellobiose. The genome presented here is only the second completed genome sequence of a type strain from a member of the family Sphingobacteriaceae to be published. The 4,635,236 bp long genome with its 3,854 protein-coding and 67 RNA genes consists of one chromosome, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Chemoorganotrophic, GEBA, Gliding motility, Gram-negative, Heparinolytic, Mesophilic, Sphingobacteriaceae, Strictly aerobic",
author = "Konstantinos Liolios and Johannes Sikorski and Meagan Lu and Matt Nolan and Alla Lapidus and Susan Lucas and Nancy Hammon and Shweta Deshpande and Cheng, {Jan Fang} and Roxanne Tapia and Cliff Han and Lynne Goodwin and Sam Pitluck and Marcel Huntemann and Natalia Ivanova and Ioanna Pagani and Konstantinos Mavromatis and Galina Ovchinikova and Amrita Pati and Amy Chen and Krishna Palaniappan and Miriam Land and Loren Hauser and Brambilla, {Evelyne Marie} and Oleg Kotsyurbenko and Manfred Rohde and Tindall, {Brian J.} and Birte Abt and Markus G{\"o}ker and Detter, {John C.} and Tanja Woyke and James Bristow and Eisen, {Jonathan A} and Victor Markowitz and Philip Hugenholtz and Klenk, {Hans Peter} and Kyrpides, {Nikos C.}",
year = "2011",
doi = "10.4056/sigs.2154937",
language = "English (US)",
volume = "5",
pages = "30--40",
journal = "Environmental Microbiomes",
issn = "1944-3277",
publisher = "BioMed Central Ltd.",
number = "1",

}

TY - JOUR

T1 - Complete genome sequence of the gliding, heparinolytic pedobacter saltans type strain (113 T)

AU - Liolios, Konstantinos

AU - Sikorski, Johannes

AU - Lu, Meagan

AU - Nolan, Matt

AU - Lapidus, Alla

AU - Lucas, Susan

AU - Hammon, Nancy

AU - Deshpande, Shweta

AU - Cheng, Jan Fang

AU - Tapia, Roxanne

AU - Han, Cliff

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Huntemann, Marcel

AU - Ivanova, Natalia

AU - Pagani, Ioanna

AU - Mavromatis, Konstantinos

AU - Ovchinikova, Galina

AU - Pati, Amrita

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Brambilla, Evelyne Marie

AU - Kotsyurbenko, Oleg

AU - Rohde, Manfred

AU - Tindall, Brian J.

AU - Abt, Birte

AU - Göker, Markus

AU - Detter, John C.

AU - Woyke, Tanja

AU - Bristow, James

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Klenk, Hans Peter

AU - Kyrpides, Nikos C.

PY - 2011

Y1 - 2011

N2 - Pedobacter saltans Steyn et al. 1998 is one of currently 32 species in the genus Pedobacter within the family Sphingobacteriaceae. The species is of interest for its isolated location in the tree of life. Like other members of the genus P. saltans is heparinolytic. Cells of P. saltans show a peculiar gliding, dancing motility and can be distinguished from other Pedobacter strains by their ability to utilize glycerol and the inability to assimilate D-cellobiose. The genome presented here is only the second completed genome sequence of a type strain from a member of the family Sphingobacteriaceae to be published. The 4,635,236 bp long genome with its 3,854 protein-coding and 67 RNA genes consists of one chromosome, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Pedobacter saltans Steyn et al. 1998 is one of currently 32 species in the genus Pedobacter within the family Sphingobacteriaceae. The species is of interest for its isolated location in the tree of life. Like other members of the genus P. saltans is heparinolytic. Cells of P. saltans show a peculiar gliding, dancing motility and can be distinguished from other Pedobacter strains by their ability to utilize glycerol and the inability to assimilate D-cellobiose. The genome presented here is only the second completed genome sequence of a type strain from a member of the family Sphingobacteriaceae to be published. The 4,635,236 bp long genome with its 3,854 protein-coding and 67 RNA genes consists of one chromosome, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Chemoorganotrophic

KW - GEBA

KW - Gliding motility

KW - Gram-negative

KW - Heparinolytic

KW - Mesophilic

KW - Sphingobacteriaceae

KW - Strictly aerobic

UR - http://www.scopus.com/inward/record.url?scp=80054911285&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=80054911285&partnerID=8YFLogxK

U2 - 10.4056/sigs.2154937

DO - 10.4056/sigs.2154937

M3 - Article

C2 - 22180808

AN - SCOPUS:80054911285

VL - 5

SP - 30

EP - 40

JO - Environmental Microbiomes

JF - Environmental Microbiomes

SN - 1944-3277

IS - 1

ER -