Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262 T)

Tanja Woyke; Olga Chertkov; Alla Lapidus; Matt Nolan; Susan Lucas; Tijana Glavina del Rio; Hope Tice; Jan Fang Cheng; Roxanne Tapia; Cliff Han; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Ioanna Pagani; Natalia Ivanova; Marcel Huntemann; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Evelyne Marie Brambilla; Manfred Rohde; Romano Mwirichia; Johannes Sikorski; Brian J. Tindall; Markus Göker; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Hans Peter Klenk; Nikos C. Kyrpides

doi:10.4056/sigs.2124912

Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262 ^T)

Tanja Woyke, Olga Chertkov, Alla Lapidus, Matt Nolan, Susan Lucas, Tijana Glavina del Rio, Hope Tice, Jan Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Marcel Huntemann, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy ChenKrishna Palaniappan, Miriam Land, Loren Hauser, Evelyne Marie Brambilla, Manfred Rohde, Romano Mwirichia, Johannes Sikorski, Brian J. Tindall, Markus Göker, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Hans Peter Klenk, Nikos C. Kyrpides

Research output: Contribution to journal › Article › peer-review

18 Scopus citations

Abstract

Fluviicola taffensis O'Sullivan et al. 2005 belongs to the monotypic genus Fluviicola within the family Cryomorphaceae. The species is of interest because of its isolated phylogenetic lo-cation in the genome-sequenced fraction of the tree of life. Strain RW262T forms a monophy-letic lineage with uncultivated bacteria represented in freshwater 16S rRNA gene libraries. A similar phylogenetic differentiation occurs between freshwater and marine bacteria in the family Flavobacteriaceae, a sister family to Cryomorphaceae. Most remarkable is the inability of this freshwater bacterium to grow in the presence of Na+ ions. All other genera in the fami-ly Cryomorphaceae are from marine habitats and have an absolute requirement for Na ⁺ ions or natural sea water. F. taffensis is the first member of the family Cryomorphaceae with a completely sequenced and publicly available genome. The 4,633,577 bp long genome with its 4,082 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original language	English (US)
Pages (from-to)	21-29
Number of pages	9
Journal	Standards in Genomic Sciences
Volume	5
Issue number	1
DOIs	https://doi.org/10.4056/sigs.2124912
State	Published - 2011
Externally published	Yes

Keywords

Chemoorganotrophic
Cryomorphaceae
Flexirubin-synthesizing
GEBA
Gram-negative
Meso-philic
Motile by gliding
Strictly aerobic

ASJC Scopus subject areas

Genetics

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10.4056/sigs.2124912

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Woyke, T., Chertkov, O., Lapidus, A., Nolan, M., Lucas, S., del Rio, T. G., Tice, H., Cheng, J. F., Tapia, R., Han, C., Goodwin, L., Pitluck, S., Liolios, K., Pagani, I., Ivanova, N., Huntemann, M., Mavromatis, K., Mikhailova, N., Pati, A., ... Kyrpides, N. C. (2011). Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262 ^T). Standards in Genomic Sciences, 5(1), 21-29. https://doi.org/10.4056/sigs.2124912

Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262 ^T). / Woyke, Tanja; Chertkov, Olga; Lapidus, Alla; Nolan, Matt; Lucas, Susan; del Rio, Tijana Glavina; Tice, Hope; Cheng, Jan Fang; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Huntemann, Marcel; Mavromatis, Konstantinos; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Brambilla, Evelyne Marie; Rohde, Manfred; Mwirichia, Romano; Sikorski, Johannes; Tindall, Brian J.; Göker, Markus; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Klenk, Hans Peter; Kyrpides, Nikos C.

In: Standards in Genomic Sciences, Vol. 5, No. 1, 2011, p. 21-29.

Research output: Contribution to journal › Article › peer-review

Woyke, T, Chertkov, O, Lapidus, A, Nolan, M, Lucas, S, del Rio, TG, Tice, H, Cheng, JF, Tapia, R, Han, C, Goodwin, L, Pitluck, S, Liolios, K, Pagani, I, Ivanova, N, Huntemann, M, Mavromatis, K, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Brambilla, EM, Rohde, M, Mwirichia, R, Sikorski, J, Tindall, BJ, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Klenk, HP & Kyrpides, NC 2011, 'Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262 ^T)', Standards in Genomic Sciences, vol. 5, no. 1, pp. 21-29. https://doi.org/10.4056/sigs.2124912

Woyke, Tanja ; Chertkov, Olga ; Lapidus, Alla ; Nolan, Matt ; Lucas, Susan ; del Rio, Tijana Glavina ; Tice, Hope ; Cheng, Jan Fang ; Tapia, Roxanne ; Han, Cliff ; Goodwin, Lynne ; Pitluck, Sam ; Liolios, Konstantinos ; Pagani, Ioanna ; Ivanova, Natalia ; Huntemann, Marcel ; Mavromatis, Konstantinos ; Mikhailova, Natalia ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Brambilla, Evelyne Marie ; Rohde, Manfred ; Mwirichia, Romano ; Sikorski, Johannes ; Tindall, Brian J. ; Göker, Markus ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Klenk, Hans Peter ; Kyrpides, Nikos C. / Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262 ^T). In: Standards in Genomic Sciences. 2011 ; Vol. 5, No. 1. pp. 21-29.

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abstract = "Fluviicola taffensis O'Sullivan et al. 2005 belongs to the monotypic genus Fluviicola within the family Cryomorphaceae. The species is of interest because of its isolated phylogenetic lo-cation in the genome-sequenced fraction of the tree of life. Strain RW262T forms a monophy-letic lineage with uncultivated bacteria represented in freshwater 16S rRNA gene libraries. A similar phylogenetic differentiation occurs between freshwater and marine bacteria in the family Flavobacteriaceae, a sister family to Cryomorphaceae. Most remarkable is the inability of this freshwater bacterium to grow in the presence of Na+ ions. All other genera in the fami-ly Cryomorphaceae are from marine habitats and have an absolute requirement for Na + ions or natural sea water. F. taffensis is the first member of the family Cryomorphaceae with a completely sequenced and publicly available genome. The 4,633,577 bp long genome with its 4,082 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.",

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AU - Woyke, Tanja

AU - Chertkov, Olga

AU - Lapidus, Alla

AU - Nolan, Matt

AU - Lucas, Susan

AU - del Rio, Tijana Glavina

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Tapia, Roxanne

AU - Han, Cliff

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Liolios, Konstantinos

AU - Pagani, Ioanna

AU - Ivanova, Natalia

AU - Huntemann, Marcel

AU - Mavromatis, Konstantinos

AU - Mikhailova, Natalia

AU - Pati, Amrita

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Brambilla, Evelyne Marie

AU - Rohde, Manfred

AU - Mwirichia, Romano

AU - Sikorski, Johannes

AU - Tindall, Brian J.

AU - Göker, Markus

AU - Bristow, James

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Klenk, Hans Peter

AU - Kyrpides, Nikos C.

PY - 2011

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KW - Cryomorphaceae

KW - Flexirubin-synthesizing

KW - GEBA

KW - Gram-negative

KW - Meso-philic

KW - Motile by gliding

KW - Strictly aerobic

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