Abstract
Fluviicola taffensis O'Sullivan et al. 2005 belongs to the monotypic genus Fluviicola within the family Cryomorphaceae. The species is of interest because of its isolated phylogenetic lo-cation in the genome-sequenced fraction of the tree of life. Strain RW262T forms a monophy-letic lineage with uncultivated bacteria represented in freshwater 16S rRNA gene libraries. A similar phylogenetic differentiation occurs between freshwater and marine bacteria in the family Flavobacteriaceae, a sister family to Cryomorphaceae. Most remarkable is the inability of this freshwater bacterium to grow in the presence of Na+ ions. All other genera in the fami-ly Cryomorphaceae are from marine habitats and have an absolute requirement for Na + ions or natural sea water. F. taffensis is the first member of the family Cryomorphaceae with a completely sequenced and publicly available genome. The 4,633,577 bp long genome with its 4,082 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
| Original language | English (US) |
|---|---|
| Pages (from-to) | 21-29 |
| Number of pages | 9 |
| Journal | Standards in Genomic Sciences |
| Volume | 5 |
| Issue number | 1 |
| DOIs | |
| State | Published - 2011 |
| Externally published | Yes |
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Keywords
- Chemoorganotrophic
- Cryomorphaceae
- Flexirubin-synthesizing
- GEBA
- Gram-negative
- Meso-philic
- Motile by gliding
- Strictly aerobic
ASJC Scopus subject areas
- Genetics
Cite this
Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262 T). / Woyke, Tanja; Chertkov, Olga; Lapidus, Alla; Nolan, Matt; Lucas, Susan; del Rio, Tijana Glavina; Tice, Hope; Cheng, Jan Fang; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Huntemann, Marcel; Mavromatis, Konstantinos; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Brambilla, Evelyne Marie; Rohde, Manfred; Mwirichia, Romano; Sikorski, Johannes; Tindall, Brian J.; Göker, Markus; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Klenk, Hans Peter; Kyrpides, Nikos C.
In: Standards in Genomic Sciences, Vol. 5, No. 1, 2011, p. 21-29.Research output: Contribution to journal › Article
}
TY - JOUR
T1 - Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262 T)
AU - Woyke, Tanja
AU - Chertkov, Olga
AU - Lapidus, Alla
AU - Nolan, Matt
AU - Lucas, Susan
AU - del Rio, Tijana Glavina
AU - Tice, Hope
AU - Cheng, Jan Fang
AU - Tapia, Roxanne
AU - Han, Cliff
AU - Goodwin, Lynne
AU - Pitluck, Sam
AU - Liolios, Konstantinos
AU - Pagani, Ioanna
AU - Ivanova, Natalia
AU - Huntemann, Marcel
AU - Mavromatis, Konstantinos
AU - Mikhailova, Natalia
AU - Pati, Amrita
AU - Chen, Amy
AU - Palaniappan, Krishna
AU - Land, Miriam
AU - Hauser, Loren
AU - Brambilla, Evelyne Marie
AU - Rohde, Manfred
AU - Mwirichia, Romano
AU - Sikorski, Johannes
AU - Tindall, Brian J.
AU - Göker, Markus
AU - Bristow, James
AU - Eisen, Jonathan A
AU - Markowitz, Victor
AU - Hugenholtz, Philip
AU - Klenk, Hans Peter
AU - Kyrpides, Nikos C.
PY - 2011
Y1 - 2011
N2 - Fluviicola taffensis O'Sullivan et al. 2005 belongs to the monotypic genus Fluviicola within the family Cryomorphaceae. The species is of interest because of its isolated phylogenetic lo-cation in the genome-sequenced fraction of the tree of life. Strain RW262T forms a monophy-letic lineage with uncultivated bacteria represented in freshwater 16S rRNA gene libraries. A similar phylogenetic differentiation occurs between freshwater and marine bacteria in the family Flavobacteriaceae, a sister family to Cryomorphaceae. Most remarkable is the inability of this freshwater bacterium to grow in the presence of Na+ ions. All other genera in the fami-ly Cryomorphaceae are from marine habitats and have an absolute requirement for Na + ions or natural sea water. F. taffensis is the first member of the family Cryomorphaceae with a completely sequenced and publicly available genome. The 4,633,577 bp long genome with its 4,082 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
AB - Fluviicola taffensis O'Sullivan et al. 2005 belongs to the monotypic genus Fluviicola within the family Cryomorphaceae. The species is of interest because of its isolated phylogenetic lo-cation in the genome-sequenced fraction of the tree of life. Strain RW262T forms a monophy-letic lineage with uncultivated bacteria represented in freshwater 16S rRNA gene libraries. A similar phylogenetic differentiation occurs between freshwater and marine bacteria in the family Flavobacteriaceae, a sister family to Cryomorphaceae. Most remarkable is the inability of this freshwater bacterium to grow in the presence of Na+ ions. All other genera in the fami-ly Cryomorphaceae are from marine habitats and have an absolute requirement for Na + ions or natural sea water. F. taffensis is the first member of the family Cryomorphaceae with a completely sequenced and publicly available genome. The 4,633,577 bp long genome with its 4,082 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
KW - Chemoorganotrophic
KW - Cryomorphaceae
KW - Flexirubin-synthesizing
KW - GEBA
KW - Gram-negative
KW - Meso-philic
KW - Motile by gliding
KW - Strictly aerobic
UR - http://www.scopus.com/inward/record.url?scp=80054858465&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=80054858465&partnerID=8YFLogxK
U2 - 10.4056/sigs.2124912
DO - 10.4056/sigs.2124912
M3 - Article
C2 - 22180807
AN - SCOPUS:80054858465
VL - 5
SP - 21
EP - 29
JO - Environmental Microbiomes
JF - Environmental Microbiomes
SN - 1944-3277
IS - 1
ER -