Complete genome sequence of the extremely Halophilic Halanaerobium praevalens type strain (GSL T)

Natalia Ivanova, Johannes Sikorski, Olga Chertkov, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Marcel Huntemann, Konstantinos Liolios, Ioanna Pagani, Konstantinos Mavromatis, Galina Ovchinikova, Amrita Pati, Amy Chen, Krishna PalaniappanMiriam Land, Loren Hauser, Evelyne Marie Brambilla, K. Palani Kannan, Manfred Rohde, Brian J. Tindall, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Alla Lapidus

Research output: Contribution to journalArticle

23 Citations (Scopus)

Abstract

Halanaerobium praevalens Zeikus et al. 1984 is the type species of the genus Halanaerobium, which in turn is the type genus of the family Halanaerobiaceae. The species is of interest because it is able to reduce a variety of nitro-substituted aromatic compounds at a high rate, and because of its ability to degrade organic pollutants. The strain is also of interest because it functions as a hydrolytic bacterium, fermenting complex organic matter and producing intermediary metabolites for other trophic groups such as sulfate-reducing and methanogenic bacteria. It is further reported as being involved in carbon removal in the Great Salt Lake, its source of isolation. This is the first completed genome sequence of a representative of the genus Halanaerobium and the second genome sequence from a type strain of the family Halanaerobiaceae. The 2,309,262 bp long genome with its 2,110 protein-coding and 70 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)312-321
Number of pages10
JournalStandards in Genomic Sciences
Volume4
Issue number3
DOIs
StatePublished - 2011

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Genome
Bacteria
Encyclopedias
Archaea
Lakes
Sulfates
Carbon
Salts
RNA
Genes
Proteins

Keywords

  • Chemoorganotroph
  • GEBA
  • Gram-negative
  • Halanaerobiaceae
  • Halophilic
  • Mesophilic
  • Moderate alkaliphile
  • Non-motile
  • Straight rod-shaped
  • Strictly anaerobic

ASJC Scopus subject areas

  • Genetics

Cite this

Ivanova, N., Sikorski, J., Chertkov, O., Nolan, M., Lucas, S., Hammon, N., ... Lapidus, A. (2011). Complete genome sequence of the extremely Halophilic Halanaerobium praevalens type strain (GSL T). Standards in Genomic Sciences, 4(3), 312-321. https://doi.org/10.4056/sigs.1824509

Complete genome sequence of the extremely Halophilic Halanaerobium praevalens type strain (GSL T). / Ivanova, Natalia; Sikorski, Johannes; Chertkov, Olga; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan Fang; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Huntemann, Marcel; Liolios, Konstantinos; Pagani, Ioanna; Mavromatis, Konstantinos; Ovchinikova, Galina; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Brambilla, Evelyne Marie; Kannan, K. Palani; Rohde, Manfred; Tindall, Brian J.; Göker, Markus; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Lapidus, Alla.

In: Standards in Genomic Sciences, Vol. 4, No. 3, 2011, p. 312-321.

Research output: Contribution to journalArticle

Ivanova, N, Sikorski, J, Chertkov, O, Nolan, M, Lucas, S, Hammon, N, Deshpande, S, Cheng, JF, Tapia, R, Han, C, Goodwin, L, Pitluck, S, Huntemann, M, Liolios, K, Pagani, I, Mavromatis, K, Ovchinikova, G, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Brambilla, EM, Kannan, KP, Rohde, M, Tindall, BJ, Göker, M, Detter, JC, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Lapidus, A 2011, 'Complete genome sequence of the extremely Halophilic Halanaerobium praevalens type strain (GSL T)', Standards in Genomic Sciences, vol. 4, no. 3, pp. 312-321. https://doi.org/10.4056/sigs.1824509
Ivanova, Natalia ; Sikorski, Johannes ; Chertkov, Olga ; Nolan, Matt ; Lucas, Susan ; Hammon, Nancy ; Deshpande, Shweta ; Cheng, Jan Fang ; Tapia, Roxanne ; Han, Cliff ; Goodwin, Lynne ; Pitluck, Sam ; Huntemann, Marcel ; Liolios, Konstantinos ; Pagani, Ioanna ; Mavromatis, Konstantinos ; Ovchinikova, Galina ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Brambilla, Evelyne Marie ; Kannan, K. Palani ; Rohde, Manfred ; Tindall, Brian J. ; Göker, Markus ; Detter, John C. ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Lapidus, Alla. / Complete genome sequence of the extremely Halophilic Halanaerobium praevalens type strain (GSL T). In: Standards in Genomic Sciences. 2011 ; Vol. 4, No. 3. pp. 312-321.
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AU - Ivanova, Natalia

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AU - Lucas, Susan

AU - Hammon, Nancy

AU - Deshpande, Shweta

AU - Cheng, Jan Fang

AU - Tapia, Roxanne

AU - Han, Cliff

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Huntemann, Marcel

AU - Liolios, Konstantinos

AU - Pagani, Ioanna

AU - Mavromatis, Konstantinos

AU - Ovchinikova, Galina

AU - Pati, Amrita

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

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AU - Rohde, Manfred

AU - Tindall, Brian J.

AU - Göker, Markus

AU - Detter, John C.

AU - Woyke, Tanja

AU - Bristow, James

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

AU - Lapidus, Alla

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KW - Straight rod-shaped

KW - Strictly anaerobic

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