Complete genome sequence of the bile-resistant pigment-producing anaerobe alistipes finegoldii type strain (ahn2437T)

Konstantinos Mavromatis, Erko Stackebrandt, Christine Munk, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan Fang Cheng, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Marcel Huntemann, Amrita Patil, Amy Chen, Krishna PalaniappanMiriam Land, Loren Hauser, Manfred Rohde, Sabine Gronow, Markus Göker, John C. Detter, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Tanja Woyke

Research output: Contribution to journalArticle

2 Citations (Scopus)

Abstract

Alistipes finegoldii Rautio et al. 2003 is one of five species of Alistipes with a validly pub-lished name: family Rikenellaceae, order Bacteroidetes, class Bacteroidia, phylum Bacteroidetes. This rod-shaped and strictly anaerobic organism has been isolated mostly from human tissues. Here we describe the features of the type strain of this species, together with the complete genome sequence, and annotation. A. finegoldii is the first member of the genus Alistipes for which the complete genome sequence of its type strain is now available. The 3,734,239 bp long single replicon genome with its 3,302 protein-coding and 68 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)26-36
Number of pages11
JournalStandards in Genomic Sciences
Volume8
Issue number1
DOIs
StatePublished - 2013

Fingerprint

Bile Pigments
Bacteroidetes
Genome
Encyclopedias
Replicon
Archaea
Names
RNA
Bacteria
Genes
Proteins

Keywords

  • Chemoorganotrophic
  • Geba
  • Gram-negative
  • Mesophile
  • Non-motile
  • Non-sporulating
  • Rikenellaceae
  • Rod-shaped
  • Strictly an-aerobic

ASJC Scopus subject areas

  • Genetics

Cite this

Complete genome sequence of the bile-resistant pigment-producing anaerobe alistipes finegoldii type strain (ahn2437T). / Mavromatis, Konstantinos; Stackebrandt, Erko; Munk, Christine; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan Fang; Tapia, Roxanne; Goodwin, Lynne A.; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Huntemann, Marcel; Patil, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Rohde, Manfred; Gronow, Sabine; Göker, Markus; Detter, John C.; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Woyke, Tanja.

In: Standards in Genomic Sciences, Vol. 8, No. 1, 2013, p. 26-36.

Research output: Contribution to journalArticle

Mavromatis, K, Stackebrandt, E, Munk, C, Lapidus, A, Nolan, M, Lucas, S, Hammon, N, Deshpande, S, Cheng, JF, Tapia, R, Goodwin, LA, Pitluck, S, Liolios, K, Pagani, I, Ivanova, N, Mikhailova, N, Huntemann, M, Patil, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Rohde, M, Gronow, S, Göker, M, Detter, JC, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Woyke, T 2013, 'Complete genome sequence of the bile-resistant pigment-producing anaerobe alistipes finegoldii type strain (ahn2437T)', Standards in Genomic Sciences, vol. 8, no. 1, pp. 26-36. https://doi.org/10.4056/sigs.3527032
Mavromatis, Konstantinos ; Stackebrandt, Erko ; Munk, Christine ; Lapidus, Alla ; Nolan, Matt ; Lucas, Susan ; Hammon, Nancy ; Deshpande, Shweta ; Cheng, Jan Fang ; Tapia, Roxanne ; Goodwin, Lynne A. ; Pitluck, Sam ; Liolios, Konstantinos ; Pagani, Ioanna ; Ivanova, Natalia ; Mikhailova, Natalia ; Huntemann, Marcel ; Patil, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Rohde, Manfred ; Gronow, Sabine ; Göker, Markus ; Detter, John C. ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Woyke, Tanja. / Complete genome sequence of the bile-resistant pigment-producing anaerobe alistipes finegoldii type strain (ahn2437T). In: Standards in Genomic Sciences. 2013 ; Vol. 8, No. 1. pp. 26-36.
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