Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4T)

Alex Copeland; Xiaojing Zhang; Monica Misra; Alla Lapidus; Matt Nolan; Susan Lucas; Shweta Deshpande; Jan Fang Cheng; Roxanne Tapia; Lynne A. Goodwin; Sam Pitluck; Konstantinos Liolios; Ioanna Pagani; Natalia Ivanova; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Chongle Pan; Cynthia D. Jeffries; John C. Detter; Evelyne Marie Brambilla; Manfred Rohde; Olivier D. Ngatchou Djao; Markus Göker; Johannes Sikorski; Brian J. Tindall; Tanja Woyke; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C. Kyrpides; Hans Peter Klenk; Konstantinos Mavromatis

doi:10.4056/sigs.2475579

Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4^T)

Alex Copeland, Xiaojing Zhang, Monica Misra, Alla Lapidus, Matt Nolan, Susan Lucas, Shweta Deshpande, Jan Fang Cheng, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren HauserChongle Pan, Cynthia D. Jeffries, John C. Detter, Evelyne Marie Brambilla, Manfred Rohde, Olivier D. Ngatchou Djao, Markus Göker, Johannes Sikorski, Brian J. Tindall, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Konstantinos Mavromatis

Medical Microbiology and Immunology

Research output: Contribution to journal › Article › peer-review

13 Scopus citations

Abstract

Runella slithyformis Larkin and Williams 1978 is the type species of the genus Runella, which belongs to the Cytophagaceae, a family that was only recently classified to the order Cytophagales in the class Cytophagia. The species is of interest because it is able to grow at temperatures as low as 4°C. This is the first completed genome sequence of a member of the genus Runella and the sixth sequence from the family Cytophagaceae. The 6,919,729 bp long genome consists of a 6.6 Mbp circular genome and five circular plasmids of 38.8 to 107.0 kbp length, harboring a total of 5,974 protein-coding and 51 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original language	English (US)
Pages (from-to)	145-154
Number of pages	10
Journal	Standards in Genomic Sciences
Volume	6
Issue number	2
DOIs	https://doi.org/10.4056/sigs.2475579
State	Published - 2012

Keywords

Chemoor-ganotrophic
Cytophagaceae
Cytophagia
GEBA
Gram-negative
Non-motile
Strictly aerobic
Sychrotolerant

ASJC Scopus subject areas

Genetics

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10.4056/sigs.2475579

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Copeland, A., Zhang, X., Misra, M., Lapidus, A., Nolan, M., Lucas, S., Deshpande, S., Cheng, J. F., Tapia, R., Goodwin, L. A., Pitluck, S., Liolios, K., Pagani, I., Ivanova, N., Mikhailova, N., Pati, A., Chen, A., Palaniappan, K., Land, M., ... Mavromatis, K. (2012). Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4^T). Standards in Genomic Sciences, 6(2), 145-154. https://doi.org/10.4056/sigs.2475579

Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4^T). / Copeland, Alex; Zhang, Xiaojing; Misra, Monica; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Deshpande, Shweta; Cheng, Jan Fang; Tapia, Roxanne; Goodwin, Lynne A.; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Pan, Chongle; Jeffries, Cynthia D.; Detter, John C.; Brambilla, Evelyne Marie; Rohde, Manfred; Ngatchou Djao, Olivier D.; Göker, Markus; Sikorski, Johannes; Tindall, Brian J.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Mavromatis, Konstantinos.

In: Standards in Genomic Sciences, Vol. 6, No. 2, 2012, p. 145-154.

Research output: Contribution to journal › Article › peer-review

Copeland, A, Zhang, X, Misra, M, Lapidus, A, Nolan, M, Lucas, S, Deshpande, S, Cheng, JF, Tapia, R, Goodwin, LA, Pitluck, S, Liolios, K, Pagani, I, Ivanova, N, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Pan, C, Jeffries, CD, Detter, JC, Brambilla, EM, Rohde, M, Ngatchou Djao, OD, Göker, M, Sikorski, J, Tindall, BJ, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Mavromatis, K 2012, 'Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4^T)', Standards in Genomic Sciences, vol. 6, no. 2, pp. 145-154. https://doi.org/10.4056/sigs.2475579

Copeland, Alex ; Zhang, Xiaojing ; Misra, Monica ; Lapidus, Alla ; Nolan, Matt ; Lucas, Susan ; Deshpande, Shweta ; Cheng, Jan Fang ; Tapia, Roxanne ; Goodwin, Lynne A. ; Pitluck, Sam ; Liolios, Konstantinos ; Pagani, Ioanna ; Ivanova, Natalia ; Mikhailova, Natalia ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Pan, Chongle ; Jeffries, Cynthia D. ; Detter, John C. ; Brambilla, Evelyne Marie ; Rohde, Manfred ; Ngatchou Djao, Olivier D. ; Göker, Markus ; Sikorski, Johannes ; Tindall, Brian J. ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Mavromatis, Konstantinos. / Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4^T). In: Standards in Genomic Sciences. 2012 ; Vol. 6, No. 2. pp. 145-154.

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abstract = "Runella slithyformis Larkin and Williams 1978 is the type species of the genus Runella, which belongs to the Cytophagaceae, a family that was only recently classified to the order Cytophagales in the class Cytophagia. The species is of interest because it is able to grow at temperatures as low as 4°C. This is the first completed genome sequence of a member of the genus Runella and the sixth sequence from the family Cytophagaceae. The 6,919,729 bp long genome consists of a 6.6 Mbp circular genome and five circular plasmids of 38.8 to 107.0 kbp length, harboring a total of 5,974 protein-coding and 51 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.",

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AU - Nolan, Matt

AU - Lucas, Susan

AU - Deshpande, Shweta

AU - Cheng, Jan Fang

AU - Tapia, Roxanne

AU - Goodwin, Lynne A.

AU - Pitluck, Sam

AU - Liolios, Konstantinos

AU - Pagani, Ioanna

AU - Ivanova, Natalia

AU - Mikhailova, Natalia

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AU - Jeffries, Cynthia D.

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AU - Göker, Markus

AU - Sikorski, Johannes

AU - Tindall, Brian J.

AU - Woyke, Tanja

AU - Bristow, James

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

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