Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4T)

Alex Copeland, Xiaojing Zhang, Monica Misra, Alla Lapidus, Matt Nolan, Susan Lucas, Shweta Deshpande, Jan Fang Cheng, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren HauserChongle Pan, Cynthia D. Jeffries, John C. Detter, Evelyne Marie Brambilla, Manfred Rohde, Olivier D. Ngatchou Djao, Markus Göker, Johannes Sikorski, Brian J. Tindall, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Konstantinos Mavromatis

Research output: Contribution to journalArticle

13 Citations (Scopus)

Abstract

Runella slithyformis Larkin and Williams 1978 is the type species of the genus Runella, which belongs to the Cytophagaceae, a family that was only recently classified to the order Cytophagales in the class Cytophagia. The species is of interest because it is able to grow at temperatures as low as 4°C. This is the first completed genome sequence of a member of the genus Runella and the sixth sequence from the family Cytophagaceae. The 6,919,729 bp long genome consists of a 6.6 Mbp circular genome and five circular plasmids of 38.8 to 107.0 kbp length, harboring a total of 5,974 protein-coding and 51 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)145-154
Number of pages10
JournalStandards in Genomic Sciences
Volume6
Issue number2
DOIs
StatePublished - 2012

Fingerprint

Cytophagaceae
Genome
Bacteria
Encyclopedias
Bacteroidetes
Archaea
Plasmids
RNA
Temperature
Genes
Proteins

Keywords

  • Chemoor-ganotrophic
  • Cytophagaceae
  • Cytophagia
  • GEBA
  • Gram-negative
  • Non-motile
  • Strictly aerobic
  • Sychrotolerant

ASJC Scopus subject areas

  • Genetics

Cite this

Copeland, A., Zhang, X., Misra, M., Lapidus, A., Nolan, M., Lucas, S., ... Mavromatis, K. (2012). Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4T). Standards in Genomic Sciences, 6(2), 145-154. https://doi.org/10.4056/sigs.2475579

Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4T). / Copeland, Alex; Zhang, Xiaojing; Misra, Monica; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Deshpande, Shweta; Cheng, Jan Fang; Tapia, Roxanne; Goodwin, Lynne A.; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Pan, Chongle; Jeffries, Cynthia D.; Detter, John C.; Brambilla, Evelyne Marie; Rohde, Manfred; Ngatchou Djao, Olivier D.; Göker, Markus; Sikorski, Johannes; Tindall, Brian J.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Mavromatis, Konstantinos.

In: Standards in Genomic Sciences, Vol. 6, No. 2, 2012, p. 145-154.

Research output: Contribution to journalArticle

Copeland, A, Zhang, X, Misra, M, Lapidus, A, Nolan, M, Lucas, S, Deshpande, S, Cheng, JF, Tapia, R, Goodwin, LA, Pitluck, S, Liolios, K, Pagani, I, Ivanova, N, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Pan, C, Jeffries, CD, Detter, JC, Brambilla, EM, Rohde, M, Ngatchou Djao, OD, Göker, M, Sikorski, J, Tindall, BJ, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Mavromatis, K 2012, 'Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4T)', Standards in Genomic Sciences, vol. 6, no. 2, pp. 145-154. https://doi.org/10.4056/sigs.2475579
Copeland, Alex ; Zhang, Xiaojing ; Misra, Monica ; Lapidus, Alla ; Nolan, Matt ; Lucas, Susan ; Deshpande, Shweta ; Cheng, Jan Fang ; Tapia, Roxanne ; Goodwin, Lynne A. ; Pitluck, Sam ; Liolios, Konstantinos ; Pagani, Ioanna ; Ivanova, Natalia ; Mikhailova, Natalia ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Pan, Chongle ; Jeffries, Cynthia D. ; Detter, John C. ; Brambilla, Evelyne Marie ; Rohde, Manfred ; Ngatchou Djao, Olivier D. ; Göker, Markus ; Sikorski, Johannes ; Tindall, Brian J. ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Mavromatis, Konstantinos. / Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4T). In: Standards in Genomic Sciences. 2012 ; Vol. 6, No. 2. pp. 145-154.
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