Abstract
Runella slithyformis Larkin and Williams 1978 is the type species of the genus Runella, which belongs to the Cytophagaceae, a family that was only recently classified to the order Cytophagales in the class Cytophagia. The species is of interest because it is able to grow at temperatures as low as 4°C. This is the first completed genome sequence of a member of the genus Runella and the sixth sequence from the family Cytophagaceae. The 6,919,729 bp long genome consists of a 6.6 Mbp circular genome and five circular plasmids of 38.8 to 107.0 kbp length, harboring a total of 5,974 protein-coding and 51 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
| Original language | English (US) |
|---|---|
| Pages (from-to) | 145-154 |
| Number of pages | 10 |
| Journal | Standards in Genomic Sciences |
| Volume | 6 |
| Issue number | 2 |
| DOIs | |
| State | Published - 2012 |
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Keywords
- Chemoor-ganotrophic
- Cytophagaceae
- Cytophagia
- GEBA
- Gram-negative
- Non-motile
- Strictly aerobic
- Sychrotolerant
ASJC Scopus subject areas
- Genetics
Cite this
Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4T). / Copeland, Alex; Zhang, Xiaojing; Misra, Monica; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Deshpande, Shweta; Cheng, Jan Fang; Tapia, Roxanne; Goodwin, Lynne A.; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Pan, Chongle; Jeffries, Cynthia D.; Detter, John C.; Brambilla, Evelyne Marie; Rohde, Manfred; Ngatchou Djao, Olivier D.; Göker, Markus; Sikorski, Johannes; Tindall, Brian J.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Mavromatis, Konstantinos.
In: Standards in Genomic Sciences, Vol. 6, No. 2, 2012, p. 145-154.Research output: Contribution to journal › Article
}
TY - JOUR
T1 - Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4T)
AU - Copeland, Alex
AU - Zhang, Xiaojing
AU - Misra, Monica
AU - Lapidus, Alla
AU - Nolan, Matt
AU - Lucas, Susan
AU - Deshpande, Shweta
AU - Cheng, Jan Fang
AU - Tapia, Roxanne
AU - Goodwin, Lynne A.
AU - Pitluck, Sam
AU - Liolios, Konstantinos
AU - Pagani, Ioanna
AU - Ivanova, Natalia
AU - Mikhailova, Natalia
AU - Pati, Amrita
AU - Chen, Amy
AU - Palaniappan, Krishna
AU - Land, Miriam
AU - Hauser, Loren
AU - Pan, Chongle
AU - Jeffries, Cynthia D.
AU - Detter, John C.
AU - Brambilla, Evelyne Marie
AU - Rohde, Manfred
AU - Ngatchou Djao, Olivier D.
AU - Göker, Markus
AU - Sikorski, Johannes
AU - Tindall, Brian J.
AU - Woyke, Tanja
AU - Bristow, James
AU - Eisen, Jonathan A
AU - Markowitz, Victor
AU - Hugenholtz, Philip
AU - Kyrpides, Nikos C.
AU - Klenk, Hans Peter
AU - Mavromatis, Konstantinos
PY - 2012
Y1 - 2012
N2 - Runella slithyformis Larkin and Williams 1978 is the type species of the genus Runella, which belongs to the Cytophagaceae, a family that was only recently classified to the order Cytophagales in the class Cytophagia. The species is of interest because it is able to grow at temperatures as low as 4°C. This is the first completed genome sequence of a member of the genus Runella and the sixth sequence from the family Cytophagaceae. The 6,919,729 bp long genome consists of a 6.6 Mbp circular genome and five circular plasmids of 38.8 to 107.0 kbp length, harboring a total of 5,974 protein-coding and 51 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
AB - Runella slithyformis Larkin and Williams 1978 is the type species of the genus Runella, which belongs to the Cytophagaceae, a family that was only recently classified to the order Cytophagales in the class Cytophagia. The species is of interest because it is able to grow at temperatures as low as 4°C. This is the first completed genome sequence of a member of the genus Runella and the sixth sequence from the family Cytophagaceae. The 6,919,729 bp long genome consists of a 6.6 Mbp circular genome and five circular plasmids of 38.8 to 107.0 kbp length, harboring a total of 5,974 protein-coding and 51 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
KW - Chemoor-ganotrophic
KW - Cytophagaceae
KW - Cytophagia
KW - GEBA
KW - Gram-negative
KW - Non-motile
KW - Strictly aerobic
KW - Sychrotolerant
UR - http://www.scopus.com/inward/record.url?scp=84863621844&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84863621844&partnerID=8YFLogxK
U2 - 10.4056/sigs.2475579
DO - 10.4056/sigs.2475579
M3 - Article
C2 - 22768358
AN - SCOPUS:84863621844
VL - 6
SP - 145
EP - 154
JO - Environmental Microbiomes
JF - Environmental Microbiomes
SN - 1944-3277
IS - 2
ER -