Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1 T)

Olivier Duplex Ngatchou Djao, Xiaojing Zhang, Susan Lucas, Alla Lapidus, Tijana Glavina del Rio, Matt Nolan, Hope Tice, Jan Fang Cheng, Cliff Han, Roxanne Tapia, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Galina Ovchinnikova, Amrita Pati, Evelyne Brambilla, Amy ChenKrishna Palaniappan, Miriam Land, Loren Hauser, Yun Juan Chang, Cynthia D. Jeffries, Manfred Rohde, Johannes Sikorski, Stefan Spring, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk

Research output: Contribution to journalArticle

10 Citations (Scopus)

Abstract

Syntrophothermus lipocalidus Sekiguchi et al. 2000 is the type species of the genus Syntrophothermus. The species is of interest because of its strictly anaerobic lifestyle, its participation in the primary step of the degradation of organic maters, and for releasing products which serve as substrates for other microorganisms. It also contributes significantly to maintain a regular pH in its environment by removing the fatty acids through β-oxidation. The strain is able to metabolize isobutyrate and butyrate, which are the substrate and the product of degradation of the substrate, respectively. This is the first complete genome sequence of a member of the genus Syntrophothermus and the second in the family Syntrophomonadaceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,405,559 bp long genome with its 2,385 protein-coding and 55 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)267-275
Number of pages9
JournalStandards in Genomic Sciences
Volume3
Issue number3
DOIs
StatePublished - 2010

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Genome
Isobutyrates
Encyclopedias
Butyrates
Archaea
Life Style
Fatty Acids
Mothers
RNA
Bacteria
Genes
Proteins

Keywords

  • Anaerobic
  • Butyrate
  • Crotonate
  • GEBA
  • Gram-negative
  • Isobutyrate
  • Motile
  • Syntrophism with methanogen
  • Syntrophomonadaceae

ASJC Scopus subject areas

  • Genetics

Cite this

Djao, O. D. N., Zhang, X., Lucas, S., Lapidus, A., del Rio, T. G., Nolan, M., ... Klenk, H. P. (2010). Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1 T). Standards in Genomic Sciences, 3(3), 267-275. https://doi.org/10.4056/sigs.1233249

Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1 T). / Djao, Olivier Duplex Ngatchou; Zhang, Xiaojing; Lucas, Susan; Lapidus, Alla; del Rio, Tijana Glavina; Nolan, Matt; Tice, Hope; Cheng, Jan Fang; Han, Cliff; Tapia, Roxanne; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Ovchinnikova, Galina; Pati, Amrita; Brambilla, Evelyne; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Rohde, Manfred; Sikorski, Johannes; Spring, Stefan; Göker, Markus; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

In: Standards in Genomic Sciences, Vol. 3, No. 3, 2010, p. 267-275.

Research output: Contribution to journalArticle

Djao, ODN, Zhang, X, Lucas, S, Lapidus, A, del Rio, TG, Nolan, M, Tice, H, Cheng, JF, Han, C, Tapia, R, Goodwin, L, Pitluck, S, Liolios, K, Ivanova, N, Mavromatis, K, Mikhailova, N, Ovchinnikova, G, Pati, A, Brambilla, E, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Rohde, M, Sikorski, J, Spring, S, Göker, M, Detter, JC, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2010, 'Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1 T)', Standards in Genomic Sciences, vol. 3, no. 3, pp. 267-275. https://doi.org/10.4056/sigs.1233249
Djao, Olivier Duplex Ngatchou ; Zhang, Xiaojing ; Lucas, Susan ; Lapidus, Alla ; del Rio, Tijana Glavina ; Nolan, Matt ; Tice, Hope ; Cheng, Jan Fang ; Han, Cliff ; Tapia, Roxanne ; Goodwin, Lynne ; Pitluck, Sam ; Liolios, Konstantinos ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Mikhailova, Natalia ; Ovchinnikova, Galina ; Pati, Amrita ; Brambilla, Evelyne ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Rohde, Manfred ; Sikorski, Johannes ; Spring, Stefan ; Göker, Markus ; Detter, John C. ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1 T). In: Standards in Genomic Sciences. 2010 ; Vol. 3, No. 3. pp. 267-275.
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AU - Djao, Olivier Duplex Ngatchou

AU - Zhang, Xiaojing

AU - Lucas, Susan

AU - Lapidus, Alla

AU - del Rio, Tijana Glavina

AU - Nolan, Matt

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Han, Cliff

AU - Tapia, Roxanne

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Liolios, Konstantinos

AU - Ivanova, Natalia

AU - Mavromatis, Konstantinos

AU - Mikhailova, Natalia

AU - Ovchinnikova, Galina

AU - Pati, Amrita

AU - Brambilla, Evelyne

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

AU - Rohde, Manfred

AU - Sikorski, Johannes

AU - Spring, Stefan

AU - Göker, Markus

AU - Detter, John C.

AU - Woyke, Tanja

AU - Bristow, James

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

PY - 2010

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